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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatccccatatatttttgtacttcactaattgaggcactttcaattactatattctttttagtataagactcaactctgaaataactgtaattttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCTAGGTTAAACTCTGTACCACAGCCAAAGCCTCATCAACCTATGAGGTCTA

Basic information

species Zea mays
transcript GRMZM2G175676_T05
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211003576|gb|FL298853.1|FL298853
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAAYAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211009129|gb|FL298875.1|FL298875
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006359|gb|FL298865.1|FL298865
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|60672590|gb|DN475291.1|DN475291
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006356|gb|FL298862.1|FL298862
EST:     AS-TATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006350|gb|FL298856.1|FL298856
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003563|gb|FL298840.1|FL298840
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|32854471|gb|CD994152.1|CD994152
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003570|gb|FL298847.1|FL298847
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003572|gb|FL298849.1|FL298849
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211009132|gb|FL298878.1|FL298878
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006351|gb|FL298857.1|FL298857
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211009127|gb|FL298873.1|FL298873
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006349|gb|FL298855.1|FL298855
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211439604|gb|FL298835.1|FL298835
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211439597|gb|FL298828.1|FL298828
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006353|gb|FL298859.1|FL298859
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003565|gb|FL298842.1|FL298842
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAAACTCC
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAA-CTCC
EST: gi|211009125|gb|FL298871.1|FL298871
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211009126|gb|FL298872.1|FL298872
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003569|gb|FL298846.1|FL298846
EST:     ASSTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211439605|gb|FL298836.1|FL298836
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211009130|gb|FL298876.1|FL298876
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003566|gb|FL298843.1|FL298843
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|32862735|gb|CF002417.1|CF002417
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211009124|gb|FL298870.1|FL298870
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|76285730|gb|DV025298.1|DV025298
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003574|gb|FL298851.1|FL298851
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|37424110|gb|CF649785.1|CF649785
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006357|gb|FL298863.1|FL298863
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211439603|gb|FL298834.1|FL298834
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006361|gb|FL298867.1|FL298867
EST:     AGSTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211437012|gb|FL298824.1|FL298824
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211437011|gb|FL298823.1|FL298823
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211009128|gb|FL298874.1|FL298874
EST:     ASSTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006360|gb|FL298866.1|FL298866
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211439606|gb|FL298837.1|FL298837
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003568|gb|FL298845.1|FL298845
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006358|gb|FL298864.1|FL298864
EST:     S-TAATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCT                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: GCTA-TTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006352|gb|FL298858.1|FL298858
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|76911783|gb|DV164430.1|DV164430
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|37426455|gb|CF650981.1|CF650981
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006354|gb|FL298860.1|FL298860
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211439595|gb|FL298826.1|FL298826
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCMAGACAAACCCTCATTAAAATGGCAATATCCCTGTAACTCC
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAA-TGGCAATATCCCTGTAACTCC
EST: gi|211003577|gb|FL298854.1|FL298854
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006363|gb|FL298869.1|FL298869
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003564|gb|FL298841.1|FL298841
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003575|gb|FL298852.1|FL298852
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003571|gb|FL298848.1|FL298848
EST:     ASSTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211439602|gb|FL298833.1|FL298833
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAA
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAA
EST: gi|211439599|gb|FL298830.1|FL298830
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATMAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 177

CTATGCTTTTGCTGAGTATGAAACAGAGGAGATTGCCCAATATGCTGTTAAGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCTAGGTTAAACTCTGTACCACAGCCAAAGCCTCATCAACCTATGAGGTCTA


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 305

CTATGCTTTTGCTGAGTATGAAACAGAGGAGATTGCCCAATATGCTGTTAAGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCTAGGTTAAACTCTGTACCACAGCCAAAGCCTCATCAACCTATGAGGTCTA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 394

CTATGCTTTTGCTGAGTATGAAACAGAGGAGATTGCCCAATATGCTGTTAAGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCTAGGTTAAACTCTGTACCACAGCCAAAGCCTCATCAACCTATGAGGTCTA


Block sizes: 47 (upstream exon), 46 (downstream exon)
Score: 124

CTATGCTTTTGCTGAGTATGAAACAGAGGAGATTGCCCAATATGCTGTTAAGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCTAGGTTAAACTCTGTACCACAGCCAAAGCCTCATCAACCTATGAGGTCTA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactatattctttttagtataagactcaactctgaaataactgtaattttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCTAGGTTAAACTCTGTACCACAGCCAAAGCCTCATCAACCTATGAGGTCTA
                                  aaataac  putative branch site (score: 124)
     tattctttttagtata  TA-rich tract