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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatccccatatatttttgtacttcactaattgaggcactttcaattactatattctttttagtataagactcaactctgaaataactgtaattttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCTAGGTTAAACTCTGTACCACAGCCAAAGCCTCATCAACCTATGAGGTCTA

Basic information

species Zea mays
transcript GRMZM2G175676_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211003576|gb|FL298853.1|FL298853
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAAYAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006356|gb|FL298862.1|FL298862
EST:     AS-TATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006350|gb|FL298856.1|FL298856
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003563|gb|FL298840.1|FL298840
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003570|gb|FL298847.1|FL298847
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003572|gb|FL298849.1|FL298849
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211009132|gb|FL298878.1|FL298878
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006351|gb|FL298857.1|FL298857
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211009127|gb|FL298873.1|FL298873
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211439604|gb|FL298835.1|FL298835
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211439597|gb|FL298828.1|FL298828
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006353|gb|FL298859.1|FL298859
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003565|gb|FL298842.1|FL298842
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAAACTCC
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAA-CTCC
EST: gi|211009125|gb|FL298871.1|FL298871
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211009126|gb|FL298872.1|FL298872
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003569|gb|FL298846.1|FL298846
EST:     ASSTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|26558237|gb|CA830472.1|CA830472
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003568|gb|FL298845.1|FL298845
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211439605|gb|FL298836.1|FL298836
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211009130|gb|FL298876.1|FL298876
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|148958451|gb|EC904686.2|EC904686
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211009124|gb|FL298870.1|FL298870
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006349|gb|FL298855.1|FL298855
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|37424110|gb|CF649785.1|CF649785
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006357|gb|FL298863.1|FL298863
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211439603|gb|FL298834.1|FL298834
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006361|gb|FL298867.1|FL298867
EST:     AGSTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003575|gb|FL298852.1|FL298852
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211437012|gb|FL298824.1|FL298824
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211437011|gb|FL298823.1|FL298823
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211009128|gb|FL298874.1|FL298874
EST:     ASSTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|21987840|gb|BQ779368.1|BQ779368
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006360|gb|FL298866.1|FL298866
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211439606|gb|FL298837.1|FL298837
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|32854471|gb|CD994152.1|CD994152
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006358|gb|FL298864.1|FL298864
EST:     S-TAATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCT                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: GCTA-TTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211006352|gb|FL298858.1|FL298858
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|37426455|gb|CF650981.1|CF650981
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211439595|gb|FL298826.1|FL298826
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCMAGACAAACCCTCATTAAAATGGCAATATCCCTGTAACTCC
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAA-TGGCAATATCCCTGTAACTCC
EST: gi|211006363|gb|FL298869.1|FL298869
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003564|gb|FL298841.1|FL298841
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|76933582|gb|DV173511.1|DV173511
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211003571|gb|FL298848.1|FL298848
EST:     ASSTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211439602|gb|FL298833.1|FL298833
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAA
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAA
EST: gi|148958452|gb|EC904687.2|EC904687
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
EST: gi|211439599|gb|FL298830.1|FL298830
EST:     AGCTATTTTCTGGTCTTGTTCGACTTCATAATMAAACGCTTAGATTTGCG                         ATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT
genomic: AGCTATTTTCTGGTCTTGTTCGACTTCATAATAAAACGCTTAGATTTGCGgtgcgtttct ... attttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tactatattctttttagtataagactcaactctgaaataactgtaattttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCTAGGTTAAACTCTGTACCACAGCCAAAGCCTCATCAACCTATGAGGTCTA
                                  aaataac  putative branch site (score: 2)
     tattctttttagtata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tatccccatatatttttgtacttcactaattgaggcactttcaattactatattctttttagtataagactcaactctgaaataactgtaattttggcagATCTCTGGGCAAGACAAACCCTCATTAAATGGCAATATCCCTGTAACTCCTAGGTTAAACTCTGTACCACAGCCAAAGCCTCATCAACCTATGAGGTCTA

- - - - - - - - - - - - - - - -gaggcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaataac