1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgtaatcttattgactgttgtagatgatgaagttgcaagttaatgtatttgagtacttcgactcacgtcagcttattgtttgtggcaaccatttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
species | Zea mays |
transcript | GRMZM2G175419_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAG AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATTEST: gi|78109291|gb|DV527707.1|DV527707
genomic: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAGgtaagcatca ... atttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
EST: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAG AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATTEST: gi|15208745|gb|BI430629.1|BI430629
genomic: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAGgtaagcatca ... atttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
EST: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGAAG AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATTEST: gi|21809627|gb|BQ667945.1|BQ667945
genomic: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAGgtaagcatca ... atttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
EST: CCCCGCACCCG-TCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAG AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATTEST: gi|76290330|gb|DV029898.1|DV029898
genomic: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAGgtaagcatca ... atttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
EST: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAG AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATTEST: gi|32795893|gb|CD948129.1|CD948129
genomic: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAGgtaagcatca ... atttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
EST: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAG AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATTEST: gi|60354503|gb|DN221476.1|DN221476
genomic: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAGgtaagcatca ... atttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
EST: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAG AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATTEST: gi|94473189|gb|EB702147.1|EB702147
genomic: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAGgtaagcatca ... atttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
EST: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAG AATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
genomic: CCCCGCACCCGTTCTCGTGACCTAGAATACCTTTTCAGCAAATATGGGAGgtaagcatca ... atttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
tatttgagtacttcgactcacgtcagcttattgtttgtggcaaccatttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
gactcac putative branch site (score: 2)
ccatttcc putative PPT
ttattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtaatcttattgactgttgtagatgatgaagttgcaagttaatgtatttgagtacttcgactcacgtcagcttattgtttgtggcaaccatttccgcagAATTCGAGAAGTGGAGTTGAAGCGTGACTATGCATTCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - ctgttgt
- - - - - - - - - - - - tgatgaa
- - - - - - - - - - - - - - - - ttgcaag
- - - - - - - - - - - - - - - - - - - - - -tgtattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt