1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...atctagtctaacccacctacctaatagtaactgctgctacggaacaaaataactttctttgcttggattaggagatgggaaattgagacaatctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATGCAGACAACTCAGAAGGAGATAAGAAGACTAAGATTGGGTCTTTCAAGAA
species | Zea mays |
transcript | GRMZM2G174990_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATGEST: gi|31997893|gb|CD661823.1|CD661823
genomic: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: GGCCCTCTCGACCGATTTGCTAGGCCAT GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATGEST: gi|161586771|gb|EY951293.1|EY951293
genomic: GGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: CGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATGEST: gi|60338296|gb|DN205269.1|DN205269
genomic: CGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATGEST: gi|71426247|gb|DR807297.1|DR807297
genomic: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATGEST: gi|28931255|gb|CB334616.1|CB334616
genomic: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: CCTCTCGA-CGATTTGCTAGGCCAT GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATGEST: gi|101386148|gb|EB815117.1|EB815117
genomic: CCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATGEST: gi|149084713|gb|EE174205.2|EE174205
genomic: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
EST: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCAT GCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
genomic: TGTGCCGGCGGACGGGATGTCAGGCCCTCTCGACCGATTTGCTAGGCCATgtgagtatga ... atctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATG
aaaataactttctttgcttggattaggagatgggaaattgagacaatctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATGCAGACAACTCAGAAGGAGATAAGAAGACTAAGATTGGGTCTTTCAAGAA
aaataac putative branch site (score: 2)
tctttgc putative PPT
tttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atctagtctaacccacctacctaatagtaactgctgctacggaacaaaataactttctttgcttggattaggagatgggaaattgagacaatctttgcagGCTTTGAAGGGTTTGTACATAACGATGAAAGGAAAGAGAGCAGATCTGATGCAGACAACTCAGAAGGAGATAAGAAGACTAAGATTGGGTCTTTCAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG