1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ggtcggcattgcattcaattttatgctaatcctatttccacatttgctttgactgctttatccattgtcttgagtttttttttttgcttttctttttcagGTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAAT
species | Zea mays |
transcript | GRMZM2G174830_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCAGTCCTGAATATGTTTGGTTTCTCGCGGCGCCGGGTGAAACTTGGAAG GTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGGEST: gi|78114801|gb|DV533189.1|DV533189
genomic: GCAGTCCTGAATATGTTTGGTTTCTCGCGGCGCCGGGTGAAACTTGGAAGgtgaatgtta ... tctttttcagGTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGG
EST: GCAGTCCTGAATATGTTTGGTTTCTCGCGGCGCCGGGTGAAACTTGGAAG GTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGGEST: gi|71433192|gb|DR814242.1|DR814242
genomic: GCAGTCCTGAATATGTTTGGTTTCTCGCGGCGCCGGGTGAAACTTGGAAGgtgaatgtta ... tctttttcagGTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGG
EST: GCAGTCCTGAATATGTTTGGTTTCTCGCGGCGCCGGGTGAAACTTGGAAG GTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGGEST: gi|211353516|gb|FL063245.1|FL063245
genomic: GCAGTCCTGAATATGTTTGGTTTCTCGCGGCGCCGGGTGAAACTTGGAAGgtgaatgtta ... tctttttcagGTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGG
EST: GCAGTCCTGAATATGTTTGGTTTCTCGCGGCGCCGGGTGAAACTTGGAAG GTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGGEST: gi|211351121|gb|FL063242.1|FL063242
genomic: GCAGTCCTGAATATGTTTGGTTTCTCGCGGCGCCGGGTGAAACTTGGAAGgtgaatgtta ... tctttttcagGTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGG
EST: GCAGTCCTGAATATGTTTGGTTTCTCGCGGCGCCGGGTGAAACTTGGAAG GTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGGEST: gi|211351119|gb|FL063240.1|FL063240
genomic: GCAGTCCTGAATATGTTTGGTTTCTCGCGGCGCCGGGTGAAACTTGGAAGgtgaatgtta ... tctttttcagGTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGG
EST: CAGTCCTGGAATATGTTTGGTTTCTCGCGGCGCCGGGTGAAACTTGGAAG GTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGGEST: gi|78081398|gb|DV509810.1|DV509810
genomic: CAGTCCTG-AATATGTTTGGTTTCTCGCGGCGCCGGGTGAAACTTGGAAGgtgaatgtta ... tctttttcagGTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGG
EST: GCAGTCCTGAATATGTTTGGTTTCTCGCGGCGCCGGGTGAAACTTGGAAG GTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGGEST: gi|211351120|gb|FL063241.1|FL063241
genomic: GCAGTCCTGAATATGTTTGGTTTCTCGCGGCGCCGGGTGAAACTTGGAAGgtgaatgtta ... tctttttcagGTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGG
EST: GCAGTCCTGAATATGTTTGGTTTCTCGCGGCGCCGGGTGAAACTTGGAAG GTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGGEST: gi|211351122|gb|FL063243.1|FL063243
genomic: GCAGTCCTGAATATGTTTGGTTTCTCGCGGCGCCGGGTGAAACTTGGAAGgtgaatgtta ... tctttttcagGTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGG
EST: GCAGTCCTGAATATGTTTGGTTTCTCGCGGCGCCGGGTGAAACTTGGAAG GTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGG
genomic: GCAGTCCTGAATATGTTTGGTTTCTCGCGGCGCCGGGTGAAACTTGGAAGgtgaatgtta ... tctttttcagGTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGG
gctttgactgctttatccattgtcttgagtttttttttttgcttttctttttcagGTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAAT
ctttgac putative branch site (score: 4)
ttgtcttgagtttttt putative PPT
tttttttttttgcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcggcattgcattcaattttatgctaatcctatttccacatttgctttgactgctttatccattgtcttgagtttttttttttgcttttctttttcagGTCGAAGGGTGACCCAAGTGATCCTTTGAACAGCTCCAGGAGTTCTGTTGGTCCCAGTAAACACCTCAGTCTGCCCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC