Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcgtagtagttatgatccaactatttactatcctacacttggagttctgacctgattcaggatcacgatctttaacaatcatgtgtggttaatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGC

Basic information

species Zea mays
transcript GRMZM2G174644_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G174644_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g16690.1 (Oryza sativa), 3'ss of exon 2
-atcgtagtagtt-atgatcc-aactatttactatccta--cacttggagttctgacctg-attcaggatcacgatctttaacaatcatgtgtggttaatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGC
 ||| |  |||   |||||   |||   ||  |||   |    |   | |||||    |  || |      | | ||||  ||| ||        ||||| ||||||| |||||||| || ||||||||||||||||| ||||||||  |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
gatctttctagaggatgattggaacacctttgtatttcagctgcacagtgttctcgtgtatatcccttcatatgctctt-gacattc-----caattaatctgcagGATCGTGATAGTTATTGGAAGATGATGCACAAGTACATAGGGGCAGATGTTACATCACTTGTGACACTTCCGGTCATCATTTTTGAGCCAATGACAATGC

upper sequence: GRMZM2G174644_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA11G14770.1 (Glycine max), 3'ss of exon 2
-atcgtagtagttatgatccaactatttactatcctacacttggagttctgacctgattcaggatcacgatctttaacaatcatgtgtggtta-atttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGC
 ||     |  |      |     || | |  || | ||   |   |  |   ||||  ||  || |     |||  |   | |  |   ||  || |  ||||  | ||| | ||||||||||||||||| || || || || || ||||| |||||| | |||||||| ||||| || || ||||| |||||||| ||| 
gatttcccttttctcttccttggcatatgcc-tcattcatacgtgctcatattctgaa-cattattatctcttttttctccctttggctcttgtatataaagGAAAGAGATGGTTACTGGAAGATGATGCAGAAGTATATTGGCTCGGATGTAACATCAATGGTGACACTACCAGTTATTATATTTGAACCAATGACTATGA

upper sequence: GRMZM2G174644_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA07G15930.3 (Glycine max), 3'ss of exon 2
-----atcgtagtagttatgatccaactatttactatcctacacttggagttctgacctgattcaggatcacgatctttaacaatcatgtgtggttaatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGC
     ||  ||    | ||| |  |  |    |  ||  |   | |  |  | |    ||  |||      | || ||||    || | |      | ||| ||||| || ||||| |||||||| |||||||| || ||  | || || ||| | |||||| | |||||||||||||| || |||||||| |||||||||||||
tttctattttatc--tcatggtggactttggaaaaattattttcctctatatttataatgtatcatttctgc-atgtttatt--tcctttacttacactttacagGAGCGAGATAGTTACTGGAAAATGATGCAAAAGTATGTTGGCTCTGATATCACATCAATGGTGACACTTCCAGTTATCATTTTTGAACCAATGACAATGC

upper sequence: GRMZM2G174644_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA18G39880.1 (Glycine max), 3'ss of exon 2
-----------atcgtagtagttatgatccaactatttactatcctacacttggagttctgacctgattcaggatcacgatctttaacaatcatgtgtggttaatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGC
           |||  | | || |   |   |  ||||  | |||| ||  |  | |  ||     |||| | ||    || |       | |  |    |||||    |||| || ||| | |||||||| |||||||| || ||  | || || ||| | |||||| | ||||||||||| || || ||||||||||||||||||||  
atttttattttatctca-tggtgaactttggagaatttcttttcctccatattta-taatgtatcaattctgcatgtttatttcct----ttacttacacttaat----aGGAGCGAGATGGTTACTGGAAAATGATGCAAAAGTATGTTGGCTCTGATATCACATCAATGGTGACACTTCCGGTTATCATTTTTGAGCCAATGACAATA-

upper sequence: GRMZM2G174644_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA15G04210.1 (Glycine max), 3'ss of exon 2
--atcgtagtagtt-atgatccaactatttactatcctacacttggagttctgacctgattcaggatcacgatctttaacaatcatgtgtggttaatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGC
   | ||  || || ||  || |  | | | ||     |||       | |  || | |||  |    |  || |||  | ||| | ||   ||  | | |||||  | ||| | ||||||||||||||||||||||| || || |||||||| |||||| | || ||||| ||||| || |||||||| |||||||| ||||
ttttggttttactttattttctatttttcttcttcagcacatacctgatgcatactttattgtga--tattattttttcctatc-tttgacttttgtatacagGAAAGAGATGGTTACTGGAAGATGATGCACAAATATATTGGCTCAGATGTAACATCAATGGTAACACTACCAGTTATTATTTTTGAACCAATGACTATGC

upper sequence: GRMZM2G174644_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT5G59420.1 (Arabidopsis thaliana), 3'ss of exon 2
atcgtagtagttatgatccaac--tatttactatcctacacttggagttctgacctgattcaggatcacgatctttaacaatcatgtgtggttaatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGC
      |||  ||     | |   | | |   || || |   |  | |||     || |||   |       |    | | | |||| |   || ||   |||| || ||||| ||||||||||||||||| ||||| ||||| || ||| |||| ||| | ||||| ||||| ||  | || |||||||| ||||| ||||
------gtaactaatcgtcgatggtgtctttgatacttcttcttaaattcctctatgtttctctact-tacccgaagaaacttatgtttttgtatttaatagGAACGAGATAGTTACTGGAAGATGATGCAGAAATATATAGGTTCGGATATTACGTCAATGGTGACTCTTCCTGTTGTTATATTTGAGCCTATGACTATGC

upper sequence: GRMZM2G174644_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT3G09300.1 (Arabidopsis thaliana), 3'ss of exon 2
atcgtagtagttatgatccaactatttactatcctacacttggagtt-ctgacctgattcaggatcacgatctttaacaatcatgtgtggttaatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGC
                |  |  || ||  |    |||  |||  |||  |||| | | |   ||||      | | | ||  ||        ||||   |||| || ||| |||| |||||||||||||| || ||||||||||| |||||||||||| | ||||| ||||| || || |||||||| |||||||||||||
---------------gtatatatacttcttcctttactattgttgttgttgacataactgttgatctaatcatctgagaaatatacac----aattcttagGATCGAGATGGCTATTGGAAGATGATGCAGAAGTACATAGGATCTGATGTTACATCAATGGTGACCCTTCCTGTGATTATTTTTGAACCAATGACAATGC

upper sequence: GRMZM2G174644_T01 (Zea mays), 3'ss of exon 2
lower sequence: AT5G02100.1 (Arabidopsis thaliana), 3'ss of exon 2
atcgtagtagttatgatccaactatttactatcctacacttggagttctgacctgattcaggatca----cgatctttaacaatcatgtgtgg--ttaatttg-cagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGC
    ||||  | ||   | ||  ||||       |   ||||  ||| | ||  || |  | |  |    |  |  |    | | || ||| |  || ||||  ||||| |||||| |||| |||||||||||||| || || ||||| || |||||||||||  | || || ||||| || || |||||||| || ||||||||| 
-gtatagtgctgatttactaaagatttctctctttgttcttgttgttgttacaagaattggaagaaaaaacagtactctggatttatatgttggcttgatttctcagGAACGTGATGGCTATTGGAAGATGATGCAGAAGTATATAGGGTCTGATGTTACATCTATGGTTACTCTTCCTGTGATCATTTTTGAACCCATGACAATGT

upper sequence: GRMZM2G174644_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv08s0007g00480.t01 (Vitis vinifera), 3'ss of exon 2
--atcgtagtagttatgatccaactatttactatcctacacttggagttctgacct--gattcaggatcacgatctttaacaatcatgtgtggttaatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGC
     ||  ||  |  |    ||      |  |  || | ||     || | || |  | ||   |||    || |||     | || |    ||  ||| |||||||| || || |||||||||||||||||||| || ||||| || ||||| |||||| | ||||||||||| || || |||||||||||  |||| || |
atggagtgataaattgggggaaaaagaaaagaaggcttctctgtatatttttacatatggttattgatgctcattttttgggttaattt----tttttttccagGACCGGGACAGTTACTGGAAGATGATGCACAAGTATATAGGCTCTGATGTCACATCAATGGTGACACTTCCTGTTATGATTTTTGAGCCGTTGACTATAC

upper sequence: GRMZM2G174644_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv06s0004g04930.t01 (Vitis vinifera), 3'ss of exon 2
atcgtagtagttatgatccaact-atttactatcctacacttggagttctgacctgattcaggatca----cgatctttaacaatcatgtgtggttaatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGC
       | ||  |||   | |  || |   ||| ||   | | | ||    |   |||    ||       ||| |||    | | |||   |||   ||| ||||  | || || ||||||||||||||||| || || ||||| |||||||| || ||| | ||||||||||||||  | ||||||||||||||||||||||
---aatcttgtcttgaattacccgatatgaaatcatattttagcaatttatcctgtattttttatttgtgctgatattt--tgagcttgttctgttttcttgtagGAAAGGGACAGTTACTGGAAGATGATGCAAAAGTATATAGGTTCAGATGTCACCTCAATGGTGACACTTCCAGTTCTGATTTTTGAGCCAATGACAATGC

upper sequence: GRMZM2G174644_T01 (Zea mays), 3'ss of exon 2
lower sequence: PP1S148_87V6.1 (Physcomitrella patens), 3'ss of exon 2
----------------------------------------------------------------------------------------atcgtagtagttatgatccaactatttactatcctacacttggagttctgacctgattcaggatcacgatctttaacaatcat-gtgtggttaatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGC
                                                                                        |  | | | |   | ||  ||||  |    |   |  |  || |    | |    ||       |      ||      |  |  |||||  | |  ||||||  | || || || ||||| ||||||||||| |||||||| || ||  |||| ||| | ||||||||||||||||| || |||||||| ||||| | ||
gtgaccttcatcttcatgccttaagcatcgagatcagtaatcatttttaatgtatgttgtggtgtggcattagtgccaatttcggcgaactggattggaattaatttaactcctcttgaattttaatgtgaaagaatcagtacatcggctgccttaccgttgggtttttgttatgtggcaagt--gcagGATAGAGAAAGTTATTGGAAAATGATGCACAAGTACATAGGTTCTGACATTACTTCAATGGTGACACTTCCAGTCATCATATTTGAGCCCATGACTACGC

upper sequence: GRMZM2G174644_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ08612 (Selaginella moellendorffii), 3'ss of exon 2
atcgtagtagttatgatccaactatttactatcctacacttggagttct-gacctgattcaggatcacgatctttaacaatcatgtgtggttaatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGC
         || |   | |   | ||   | || |   |||  | | || |   |  ||      | |  |||||     | | |        ||    |||| ||||| ||||||||||| ||||||||||| || || ||||| || || || ||  | |||||||| |||||  | ||||||||||| ||||| ||||
---------gtaagtcttcccttgttctttttcttgttctttcaatacttgtttttgtttgtttcctcactctttggtctttacg--------atcgatagGATCGTGAGAGCTACTGGAAAATGATGCACAAGTATATTGGATCGGACGTCACTTCCATGGTGACACTGCCAGTTTTGATTTTTGAGCCCATGACGATGC

upper sequence: GRMZM2G174644_T01 (Zea mays), 3'ss of exon 2
lower sequence: EFJ19778 (Selaginella moellendorffii), 3'ss of exon 2
atcgtagtagttatgatccaactatttactatcctacacttggagttct-gacctgattcaggatcacgatctttaacaatcatgtgtggttaatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGC
         || |   | |   | ||   | || |   |||  | | || |   |  ||      | |  |||||     | | |        ||    |||| ||||| ||||||||||| ||||||||||| || || ||||| || || || ||  | |||||||| |||||  | ||||||||||| ||||| ||||
---------gtaagtcttcccttgttctttttcttgttcttttaatacttgtttttgtttgtttcctcactctttggtctttacg--------atcgatagGATCGTGAGAGCTACTGGAAAATGATGCACAAGTATATTGGATCGGACGTCACTTCCATGGTGACACTGCCAGTTTTGATTTTTGAGCCCATGACGATGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22491096|gb|BU051019.1|BU051019
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: gi|19351392|gb|BM895924.1|BM895924
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: gi|13150716|gb|BG321038.1|BG321038
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: gi|211272002|gb|FK970185.1|FK970185
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATGCACAAAT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAAT
EST: gi|74244334|gb|DT652248.1|DT652248
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: gi|211271996|gb|FK970179.1|FK970179
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GAC-GTGATAGCTACTGGAAGATGATGCACAAATACATAG
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAG
EST: gi|211271998|gb|FK970181.1|FK970181
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: gi|148954837|gb|EC900310.2|EC900310
EST:     GCGCAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: gi|149078287|gb|EE167049.2|EE167049
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: gi|71326510|gb|DR799932.1|DR799932
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: gi|94475418|gb|EB704376.1|EB704376
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: gi|148995971|gb|EE035219.2|EE035219
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: gi|28909493|gb|CB331845.1|CB331845
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: gi|76011657|gb|DT938827.1|DT938827
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: gi|211271999|gb|FK970182.1|FK970182
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: gi|148940242|gb|EC885014.2|EC885014
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: gi|78116426|gb|DV534813.1|DV534813
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: gi|71326507|gb|DR799931.1|DR799931
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: gi|149084040|gb|EE173435.2|EE173435
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT
EST: gi|211272003|gb|FK970186.1|FK970186
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAGCTACTGGAAGATGATTGCACAAATACATAGGATCAGATGT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGAT-GCACAAATACATAGGATCAGATGT
EST: gi|18659308|gb|BM500269.1|BM500269
EST:     GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAG                         GACCGTGATAACTACTGGAAGATGATGCACAAATACATANGATCAGATGTT
genomic: GCACAGATGATGCTGAAGAAGAAGCTTTGAAGGGGAGATGGAAGCAGGAGgtaaggagat ... taatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgacctgattcaggatcacgatctttaacaatcatgtgtggttaatttgcagGACCGTGATAGCTACTGGAAGATGATGCACAAATACATAGGATCAGATGTTACATCACTTGTGACACTTCCAGTCATAATTTTTGAGCCAATGACAATGC
                          tttaacaat  TA-rich tract