1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatacttccttgtatacatttgcgtgtagataattcttccctagagatgctttttcatagtttaaatcaacacagtgcttctatggtatatttggtgcagTTATACGATCAGGTGATTGGCGATGTGATTTGCCATGGTGATAAAAACTTCTTAAAAGATGGGCGCAAGAGCTTTCCTAGTGGCCACACTTCGT
species | Zea mays |
transcript | GRMZM2G174343_T07 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGAGACCGAGGCCAGACTTCTTCTGGCGATGCTTTCCTGATGGAAAGCAG TTATACGATCAGGTGATTGGCGATGTGATTTGCCATGGTGATAAAAACTTCEST: gi|76917794|gb|DV167005.1|DV167005
genomic: GGAGACCGAGGCCAGACTTCTTCTGGCGATGCTTTCCTGATGGAAAGCAGgtatacttcc ... tttggtgcagTTATACGATCAGGTGATTGGCGATGTGATTTGCCATGGTGATAAAAACTTC
EST: GGAGACCGAGGCCAGACTTCTTCTGGCGATGCTTTCCTGATGGAAAGCAG TTATACGATCAGGTGATTGGCGATGTGATTTGCCATGGTGATAAAAACTTC
genomic: GGAGACCGAGGCCAGACTTCTTCTGGCGATGCTTTCCTGATGGAAAGCAGgtatacttcc ... tttggtgcagTTATACGATCAGGTGATTGGCGATGTGATTTGCCATGGTGATAAAAACTTC
gatgctttttcatagtttaaatcaacacagtgcttctatggtatatttggtgcagTTATACGATCAGGTGATTGGCGATGTGATTTGCCATGGTGATAAAAACTTCTTAAAAGATGGGCGCAAGAGCTTTCCTAGTGGCCACACTTCGT
tttttcatagtttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatacttccttgtatacatttgcgtgtagataattcttccctagagatgctttttcatagtttaaatcaacacagtgcttctatggtatatttggtgcagTTATACGATCAGGTGATTGGCGATGTGATTTGCCATGGTGATAAAAACTTCTTAAAAGATGGGCGCAAGAGCTTTCCTAGTGGCCACACTTCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT