1 5' 3' | 2 5' 3' | 3 5' 3' |
...tacgtcttgcatttttgatatgtctgatttttttagaaatatatttattttaggatagagggtgtatatgttattcttaaaacttttttttacattgtagGGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCATTCATGTTATCTTGCATAATTATCCTCCTCCATTCCCCAAGCGTGTACTC
species | Zea mays |
transcript | GRMZM2G173874_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGCTCGTACAA GGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCATEST: gi|18176273|gb|BM351287.1|BM351287
genomic: TGCTCGTACAAgtgagcctgc ... tacattgtagGGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCAT
EST: GCTGCAATTCTGTGCCTCCTGCTCGTACAA GGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCATEST: gi|78114145|gb|DV532534.1|DV532534
genomic: GCTGCAATTCTGTGCCTCCTGCTCGTACAAgtgagcctgc ... tacattgtagGGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCAT
EST: GGATTCGGCAGCACAGTGGAGCTGCAATTCTGTGCCTCCTGCTCGTACAA GGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCATEST: gi|74239236|gb|DT647150.1|DT647150
genomic: GGATTCGGCAGCACAGTGGAGCTGCAATTCTGTGCCTCCTGCTCGTACAAgtgagcctgc ... tacattgtagGGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCAT
EST: GGATTCGGCAGCACAGTGGAGCTGCAATTCTGTGCCTCCTGCTCGTACAA GGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCATEST: gi|76018369|gb|DT945539.1|DT945539
genomic: GGATTCGGCAGCACAGTGGAGCTGCAATTCTGTGCCTCCTGCTCGTACAAgtgagcctgc ... tacattgtagGGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCAT
EST: GGATTCGGCAGCACAGTGGAGCTGCAATTCTGTGCCTCCTGCTCGTACAA GGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCATEST: gi|9255115|gb|BE345583.1|BE345583
genomic: GGATTCGGCAGCACAGTGGAGCTGCAATTCTGTGCCTCCTGCTCGTACAAgtgagcctgc ... tacattgtagGGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCAT
EST: GGATTCGGCAGCACAGTGGAGCTGCAATTCTGTGCCTCCTGCTCGTACAA GGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCATEST: gi|211434403|gb|FL298799.1|FL298799
genomic: GGATTCGGCAGCACAGTGGAGCTGCAATTCTGTGCCTCCTGCTCGTACAAgtgagcctgc ... tacattgtagGGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCAT
EST: GGATTCGGCAGCACAGTGGAGCTGCAATTCTGTGCCTCCTGCTCGTACAA GGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCATEST: gi|149014933|gb|EE044663.2|EE044663
genomic: GGATTCGGCAGCACAGTGGAGCTGCAATTCTGTGCCTCCTGCTCGTACAAgtgagcctgc ... tacattgtagGGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCAT
EST: GGATTCGGCAGCACAGTGGAGCTGCAATTCTGTGCTTCCTGCTCGTACAA GGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCCTCATTTCCTGGCAEST: gi|18173980|gb|BM349368.1|BM349368
genomic: GGATTCGGCAGCACAGTGGAGCTGCAATTCTGTGCCTCCTGCTCGTACAAgtgagcctgc ... tacattgtagGGGAACTGCAGTGACCATGAAGCGCATGCTGGAAA-CCTCATTTCCTGGCA
EST: AGTGGAGCTGCAATTCTGTGCCTCCTGCTCGTACAA GGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCAT
genomic: AGTGGAGCTGCAATTCTGTGCCTCCTGCTCGTACAAgtgagcctgc ... tacattgtagGGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCAT
tattttaggatagagggtgtatatgttattcttaaaacttttttttacattgtagGGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCATTCATGTTATCTTGCATAATTATCCTCCTCCATTCCCCAAGCGTGTACTC
cttttttttacatt CT-rich tract
tatatgttattcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tacgtcttgcatttttgatatgtctgatttttttagaaatatatttattttaggatagagggtgtatatgttattcttaaaacttttttttacattgtagGGGAACTGCAGTGACCATGAAGCGCATGCTGGAAACCTCATTTCCTGGCATTCATGTTATCTTGCATAATTATCCTCCTCCATTCCCCAAGCGTGTACTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - ttgcatt
- - - - - - - - - - - -ctgattt