Sequence
atgc intronic sequence ATGC exonic sequencegtcactaaagctatagctgcagcttttgccgcatggctattaatcaagaaaccagatgacttgagacgtttaagaatctctgttggacatgattcatgaatttctgcacataaattgcagAATCCAGTCACTCATGGAATCACTGCTGCTAGACACGATATCCTACAATTTGGATTGGCTTCAACACCTGCAATGTTCAATAGTACACTTACAGAAGATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G173674_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g26610.1 (Oryza sativa), 3'ss of exon 5
gtcactaaagctatagctgcagcttttgccgcatggctattaatcaagaaaccagatgacttgagacgtttaagaatctctgttggacatgattcatgaatttctgcacataaattgcagAATCCAGTCACTCATGGAATCACTGCTGCTAGACACGATATCCTACAATTTGGATTGGCTTCAACACCTGCAATGTTCAATAGTACACTTACAGAAGATG------------------------------------------
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-----------------------------------------------------------ttccacaatttcaatcag-tcttttcttcacaactttcttacttctctgcttaacaagtaaagatctgccaaatat----tcatt---------tatgacaattcatgatgtagATTGGCTTCAACACCAGCAATGTTCAACAGTACACTTACAGAAGATGAGATAAATCATTGCCCAGTTGATGGAGCCATAATGATAACAG
upper sequence: GRMZM2G173674_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv13s0019g04370.t01 (Vitis vinifera), 3'ss of exon 5
gtcactaaagctatagctgcagcttttgccgcatggctattaatcaag--aaaccagatgacttgagacgtttaagaatct-ctgttggacatgat-tcatgaatttctgcacataaattgcagAATCCAGTCACTCATGGAATCACTGCTGCTAGACACGATATCCTACAATTTGGATTGGCTTCAACACCTGCAATGTTCAATAGTACACTTACAGAAGATG
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-------------tatatactatgttttccatagataccatcatcaagggaaattttgttgttttttttgtctgattttttactgccttgattgatatcatttcttttttcagATTAGCTTCAACA-CCAGCAATGTTTAATAGCACACTTACTGAAGGCGA------ACAGTTT---TTGTGTCCTGCAGATGGA---TCCATTATGATAACCG--------- atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.acgtttaagaatctctgttggacatgattcatgaatttctgcacataaattgcagAATCCAGTCACTCATGGAATCACTGCTGCTAGACACGATATCCTACAATTTGGATTGGCTTCAACACCTGCAATGTTCAATAGTACACTTACAGAAGATG
acataaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcactaaagctatagctgcagcttttgccgcatggctattaatcaagaaaccagatgacttgagacgtttaagaatctctgttggacatgattcatgaatttctgcacataaattgcagAATCCAGTCACTCATGGAATCACTGCTGCTAGACACGATATCCTACAATTTGGATTGGCTTCAACACCTGCAATGTTCAATAGTACACTTACAGAAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG