1 5' 3' | 2 5' 3' | 3 5' 3' |
...tttctttcctgagaaatgttcaggcaagcactgcaatgcaacggtaccgatctgtatgacatgagactgagcgaggcattactctctttgttcgtttcagGTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCAATATCCACATGTTCTGTGCGCGTAGGCCAGGCATCCTGCTGTCGACAATGACGGCCCTCGACAGCC
species | Zea mays |
transcript | GRMZM2G173534_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGAACTTTGCCCGGGCTCATTCCCAAGCCCTACTGGACAACAAGCCACA GTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCAATATCCACATGTTCTGTEST: gi|149084201|gb|EE173617.2|EE173617
genomic: AAGAACTTTGCCCGGGCTCATTCCCAAGCCCTACTGGACAACAAGCCACAgtgagtccaa ... ttcgtttcagGTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCAATATCCACATGTTCTGT
EST: AAGAACTTTGCCCGGGCTCATTCCCAAGCCCTACTGGACAACAAGCCACA GTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCCATATEST: gi|71759205|gb|DR957142.1|DR957142
genomic: AAGAACTTTGCCCGGGCTCATTCCCAAGCCCTACTGGACAACAAGCCACAgtgagtccaa ... ttcgtttcagGTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCAATAT
EST: AAGAACTTTGCCCGGGCTCATTCCCAAGCCCTACTGGACAACAAGCCACA GTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCAATATCCACATGTTCTGTEST: gi|28873811|gb|CB329749.1|CB329749
genomic: AAGAACTTTGCCCGGGCTCATTCCCAAGCCCTACTGGACAACAAGCCACAgtgagtccaa ... ttcgtttcagGTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCAATATCCACATGTTCTGT
EST: AAGAACTTTGCCCGGGCTCATTCCCAAGCCCTACTGGACAACAAGCCACA GTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCAATATCCACATGTTCTGTEST: gi|149000812|gb|EE038037.2|EE038037
genomic: AAGAACTTTGCCCGGGCTCATTCCCAAGCCCTACTGGACAACAAGCCACAgtgagtccaa ... ttcgtttcagGTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCAATATCCACATGTTCTGT
EST: AAGAACTTTGCCCGGGCTCATTCCCAAGCCCTACTGGACAACAAGCCACA GTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCAATATCCACATGTTCTGTEST: gi|148965911|gb|EE016816.2|EE016816
genomic: AAGAACTTTGCCCGGGCTCATTCCCAAGCCCTACTGGACAACAAGCCACAgtgagtccaa ... ttcgtttcagGTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCAATATCCACATGTTCTGT
EST: AAGAACTTTGCCCGGGCTCATTCCCAAGCCCTACTGGACAACAAGCCACA GTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCAATATCCACATGTTCTGTEST: gi|149013527|gb|EE043014.2|EE043014
genomic: AAGAACTTTGCCCGGGCTCATTCCCAAGCCCTACTGGACAACAAGCCACAgtgagtccaa ... ttcgtttcagGTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCAATATCCACATGTTCTGT
EST: AAGAACTTTGCCCGGGCTCATTCCCAAGCCCTACTGGACAACAAGCCACA GTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCAATATCCACATGTTCTGTEST: gi|74241888|gb|DT649802.1|DT649802
genomic: AAGAACTTTGCCCGGGCTCATTCCCAAGCCCTACTGGACAACAAGCCACAgtgagtccaa ... ttcgtttcagGTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCAATATCCACATGTTCTGT
EST: AAGAACTTTGCCCGGGCTCATTCCCAAGCCCTACTGGACAACAAGCCACA GTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCAATATCCACATGTTCTGT
genomic: AAGAACTTTGCCCGGGCTCATTCCCAAGCCCTACTGGACAACAAGCCACAgtgagtccaa ... ttcgtttcagGTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCAATATCCACATGTTCTGT
accgatctgtatgacatgagactgagcgaggcattactctctttgttcgtttcagGTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCAATATCCACATGTTCTGTGCGCGTAGGCCAGGCATCCTGCTGTCGACAATGACGGCCCTCGACAGCC
ctctctttgttcgttt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctttcctgagaaatgttcaggcaagcactgcaatgcaacggtaccgatctgtatgacatgagactgagcgaggcattactctctttgttcgtttcagGTCGAAGTCAGGATGAGGGAAGGGCATGCAGTCAATATCCACATGTTCTGTGCGCGTAGGCCAGGCATCCTGCTGTCGACAATGACGGCCCTCGACAGCC
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