1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcttaatataatgatacgcagctctcctgcgctttcgagaaaaaaataaacagctattattgttcccgctagagggccttacttcttgaatttttcctagGCGGAAGAAGAGGCACTTCTCCTACAACAGTACAATATACAAAATGATGGTGGAGATGTGTTTAGACAAAGAGTTGAGCCTTACATGCACCAGGTTCTGA
species | Zea mays |
transcript | GRMZM2G173416_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CGGCCAGGGCGCAGGAGAAGTCCGACGAGGAATTCGCACGGATGCTTCAG GCGGAAGAAGAGGCACTTCTCCTACAACAGTACAATATACAAAATGATGGTEST: gi|211072100|gb|FK968189.1|FK968189
genomic: CGGCCAGGGCGCAGGAGAAGTCCGACGAGGAATTCGCACGGATGCTTCAGgtgcagagtt ... tttttcctagGCGGAAGAAGAGGCACTTCTCCTACAACAGTACAATATACAAAATGATGGT
EST: CGGCCAGGGCGCAGGAGAAGTCCGACGAGGAATTCGCACGGATGCTTCAG GCGGAAGAAGAGGCACTTCTCCTACAACAGTACAATATACAAAATGATNGGEST: gi|101393672|gb|EB818768.1|EB818768
genomic: CGGCCAGGGCGCAGGAGAAGTCCGACGAGGAATTCGCACGGATGCTTCAGgtgcagagtt ... tttttcctagGCGGAAGAAGAGGCACTTCTCCTACAACAGTACAATATACAAAATGAT-GG
EST: CGGCCAGGGCGCAGGAGAAGTCCGACGAGGAATTCGCACGGATGCTTCAG GCGGAAGAAGAGGCACTTCTCCTACAACAGTACAATATACAAAATGATGGTEST: gi|76919533|gb|DV167765.1|DV167765
genomic: CGGCCAGGGCGCAGGAGAAGTCCGACGAGGAATTCGCACGGATGCTTCAGgtgcagagtt ... tttttcctagGCGGAAGAAGAGGCACTTCTCCTACAACAGTACAATATACAAAATGATGGT
EST: CGGCCAGGGCGCAGGAGAAGTCCGACGAGGAATTCGCACGGATGCTTCAG GCGGAAGAAGAGGCACTTCTCCTACAACAGTACAATATACAAAATGATGGT
genomic: CGGCCAGGGCGCAGGAGAAGTCCGACGAGGAATTCGCACGGATGCTTCAGgtgcagagtt ... tttttcctagGCGGAAGAAGAGGCACTTCTCCTACAACAGTACAATATACAAAATGATGGT
ataaacagctattattgttcccgctagagggccttacttcttgaatttttcctagGCGGAAGAAGAGGCACTTCTCCTACAACAGTACAATATACAAAATGATGGTGGAGATGTGTTTAGACAAAGAGTTGAGCCTTACATGCACCAGGTTCTGA
gccttac putative branch site (score: 3)
tttttcct putative PPT
tattattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcttaatataatgatacgcagctctcctgcgctttcgagaaaaaaataaacagctattattgttcccgctagagggccttacttcttgaatttttcctagGCGGAAGAAGAGGCACTTCTCCTACAACAGTACAATATACAAAATGATGGTGGAGATGTGTTTAGACAAAGAGTTGAGCCTTACATGCACCAGGTTCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG