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gtcagttcgccgggtggttactggttgtctgtgccatggtgttgccgtgttggtcgagggtggtttgacatttgtgttgtttggttgtagGAGGTGCATAACTTCTTTAAGAAGACCTTCAAGTTCCTGGTCACGGACACGGTGGAACACAGTGATGGGGTCCAGAAGTGCATCAGGGTGCGGTTCGGGT
species | Zea mays |
transcript | GRMZM2G173137_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATGTCTCGCCTGTCATTCTATCGCCTGATGCCGACAAAGCACACCGTTCG GAGGTGCATAACTTCTTTAAGAAGACCTTCAAGTTCCTGGTCACGGACACGEST: gi|101396092|gb|EB819973.1|EB819973
genomic: ATGTCTCGCCTGTCATTCTATCGCCTGATGCCGACAAAGCACACCGTTCGgtcagttcgc ... ttggttgtagGAGGTGCATAACTTCTTTAAGAAGACCTTCAAGTTCCTGGTCACGGACACG
EST: ATGTCTCGCCTGTCATTCTATCGCCTGATGCCGACAAAGCACACCGTTCG GAGGTGCATAACTTCTTTAAGAAGACCCTTCAAGTTCCTGGTCACGGACACEST: gi|211270949|gb|FL142983.1|FL142983
genomic: ATGTCTCGCCTGTCATTCTATCGCCTGATGCCGACAAAGCACACCGTTCGgtcagttcgc ... ttggttgtagGAGGTGCATAACTTCTTTAAGAAGACC-TTCAAGTTCCTGGTCACGGACAC
EST: ATGTCTCGCCTGTCATTCTATCGCCTGATGCCGACAAAGCACACCGTTCG GAGGTGCATAACTEST: gi|93283509|gb|EB675773.1|EB675773
genomic: ATGTCTCGCCTGTCATTCTATCGCCTGATGCCGACAAAGCACACCGTTCGgtcagttcgc ... ttggttgtagGAGGTGCATAACT
EST: ATGTCTCGCCTGTCATTCTATCGCCTGATGCCGACAAAGCACACCGTTCG GAGGTGCATAACTTCTTTAAGAAGACCTTCAAGTTCCTGGTCACGGACACGEST: gi|211270951|gb|FL142985.1|FL142985
genomic: ATGTCTCGCCTGTCATTCTATCGCCTGATGCCGACAAAGCACACCGTTCGgtcagttcgc ... ttggttgtagGAGGTGCATAACTTCTTTAAGAAGACCTTCAAGTTCCTGGTCACGGACACG
EST: TGTCTCGCCTGTCATTCTATCGCCTGATGCCGACAAAGCACACCGNNTCG GAGGTGCATAACTTCTTTAAGAAGACCTTCAAGTTCCTGGTCACGGACACEST: gi|19057910|gb|BM736577.1|BM736577
genomic: TGTCTCGCCTGTCATTCTATCGCCTGATGCCGACAAAGCACACCGT-TCGgtcagttcgc ... ttggttgtagGAGGTGCATAACTTCTTTAAGAAGACCTTCAAGTTCCTGGTCACGGACAC
EST: ATGTCTCGCCTGTCATTCTATCGCCTGATGCCGACAAAGCACACCGTTCG GAGGTGCATAACTTCTTTAAGAAGACCTTCAAGTTCCTGG
genomic: ATGTCTCGCCTGTCATTCTATCGCCTGATGCCGACAAAGCACACCGTTCGgtcagttcgc ... ttggttgtagGAGGTGCATAACTTCTTTAAGAAGACCTTCAAGTTCCTGG
atggtgttgccgtgttggtcgagggtggtttgacatttgtgttgtttggttgtagGAGGTGCATAACTTCTTTAAGAAGACCTTCAAGTTCCTGGTCACGGACACGGTGGAACACAGTGATGGGGTCCAGAAGTGCATCAGGGTGCGGTTCGGGT
gtttgac putative branch site (score: 4)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttcgccgggtggttactggttgtctgtgccatggtgttgccgtgttggtcgagggtggtttgacatttgtgttgtttggttgtagGAGGTGCATAACTTCTTTAAGAAGACCTTCAAGTTCCTGGTCACGGACACGGTGGAACACAGTGATGGGGTCCAGAAGTGCATCAGGGTGCGGTTCGGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT