1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gaattttctgcttgtttgatctaccattgctgtcagcgtgcatattatagaaaaatatgcacattgtcttattccttaatgtatctttgtgcaagtgtagGTAATTCTGGATTCCTTCCAGCACTGTTGCCTGACCAGGTCCGAAAGCTAAAGCAGCTCAGCGTGCTAACTCTGGCAGAGTCAACTAAG
species | Zea mays |
transcript | GRMZM2G171745_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTGGACTTGCTCCGGCTCTTCGCCTACGGTACCCTGAATGACTACAAGA GTAATTCTGGATTCCTTCCAGCACTGTTGCCCTGACCAGGTCCGAAAGCTAEST: gi|211180924|gb|FK980686.1|FK980686
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTACGGTACCCTGAATGACTACAAGAgtaagattgt ... gcaagtgtagGTAATTCTGGATTCCTTCCAGCACTGTTGCC-TGACCAGGTCCGAAAGCTA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTACGGTACCCTGAATGACTACAAGA GTAATTCTGGATTCCTTCCAGCACTGTTGCCTGACCAGGTCCGAAAGCTAAEST: gi|211178518|gb|FK980676.1|FK980676
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTACGGTACCCTGAATGACTACAAGAgtaagattgt ... gcaagtgtagGTAATTCTGGATTCCTTCCAGCACTGTTGCCTGACCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTACGGTACCCTGAATGACTACAAGA GTAATTCTGGATTCCTTCCAGCACTGTTGCCTGACCAGGTCCGAAAGCTAAEST: gi|211178522|gb|FK980680.1|FK980680
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTACGGTACCCTGAATGACTACAAGAgtaagattgt ... gcaagtgtagGTAATTCTGGATTCCTTCCAGCACTGTTGCCTGACCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTACGGTACCCTGAATGACTACAAGA GTAATTCTGGATTCCTTCCAGCACTGTTGCCTGACCAGGTCCGAAAGCTAAEST: gi|211180931|gb|FK980693.1|FK980693
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTACGGTACCCTGAATGACTACAAGAgtaagattgt ... gcaagtgtagGTAATTCTGGATTCCTTCCAGCACTGTTGCCTGACCAGGTCCGAAAGCTAA
EST: ACTGGACTTGCTCCGGCTCTTCGCCTACGGTACCCTGAATGACTACAAGA GTAATTCTGGATTCCTTCCAGCACTGTTGCCTGACCAGGTCCGAAAGCTAA
genomic: ACTGGACTTGCTCCGGCTCTTCGCCTACGGTACCCTGAATGACTACAAGAgtaagattgt ... gcaagtgtagGTAATTCTGGATTCCTTCCAGCACTGTTGCCTGACCAGGTCCGAAAGCTAA
tatagaaaaatatgcacattgtcttattccttaatgtatctttgtgcaagtgtagGTAATTCTGGATTCCTTCCAGCACTGTTGCCTGACCAGGTCCGAAAGCTAAAGCAGCTCAGCGTGCTAACTCTGGCAGAGTCAACTAAG
ccttaat putative branch site (score: 107)
aaaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaattttctgcttgtttgatctaccattgctgtcagcgtgcatattatagaaaaatatgcacattgtcttattccttaatgtatctttgtgcaagtgtagGTAATTCTGGATTCCTTCCAGCACTGTTGCCTGACCAGGTCCGAAAGCTAAAGCAGCTCAGCGTGCTAACTCTGGCAGAGTCAACTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - tgcttgt
- - - - - - - - - - - - - -tgctgtc
- - - - - - - - - - - - - - - - - -gcgtgca
- - - - - - - - - - - - - - - - - - - - - - - - agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tatgcac