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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttaaatgttgctgccttgtactgtgcctgtaatggaaattctgtaaggttttcttctcattcactgaacttctgtgcagATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCGAAGCCGAGACAGAGGTGAAGGCCTTGAAAGGCAATGATGTGGACCAGCA

Basic information

species Zea mays
transcript GRMZM2G171660_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G171660_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g41910.1 (Oryza sativa), 3'ss of exon 2
gttaaatgttgctgccttgtactgtgcctgtaatggaaattctgtaaggttttcttc---tcattcactgaacttctgtgca--------gATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCGAAGCCGAGACAGAGGTGAAGGCCTTGAAAGGCAATGATGTGGACCAGCA---------
       ||| |||  || |||  |   | | | ||||||  |  |   |   ||||   | ||   ||||  || | |  |        ||||| ||||   |||| |||||||| || |||||||| ||||||||||| ||||| ||| |||||||| | |||| || || ||| | ||  ||  |  |         
-------gttactgatttctaccttctgttttaaggaaataatacagaatacacttcacgtgatctcctgacattttctttaatctttctgatgccccagGAATTGAAGATGATTTCGATAAATTTCAAAAGGAGGTTATAGAAGCTGAGGCAGAGGTGGAAGCCTCGACAGACAAGGCTGCAGATAACGACATAAACCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211141172|gb|FL018634.1|FL018634
EST:     CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAG                         ATGCTCCAGATGTTGA
genomic: CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAGgttaaatgtt ... ttctgtgcagATGCTCCAGATGTTGA
EST: gi|211141169|gb|FL018631.1|FL018631
EST:     CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAG                         ATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGT
genomic: CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAGgttaaatgtt ... ttctgtgcagATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGT
EST: gi|211475992|gb|FL018624.1|FL018624
EST:     CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAG                         ATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
genomic: CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAGgttaaatgtt ... ttctgtgcagATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
EST: gi|50335300|gb|CO530426.1|CO530426
EST:     CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAG                         ATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
genomic: CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAGgttaaatgtt ... ttctgtgcagATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
EST: gi|149070733|gb|EE159146.2|EE159146
EST:     CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAG                         ATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
genomic: CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAGgttaaatgtt ... ttctgtgcagATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
EST: gi|91054747|gb|EB165165.1|EB165165
EST:     CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAG                         ATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
genomic: CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAGgttaaatgtt ... ttctgtgcagATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
EST: gi|76909704|gb|DV163493.1|DV163493
EST:     CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAG                         ATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
genomic: CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAGgttaaatgtt ... ttctgtgcagATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
EST: gi|148994746|gb|EE034217.2|EE034217
EST:     CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAG                         ATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
genomic: CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAGgttaaatgtt ... ttctgtgcagATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
EST: gi|211141171|gb|FL018633.1|FL018633
EST:     CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAG                         ATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
genomic: CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAGgttaaatgtt ... ttctgtgcagATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
EST: gi|148966210|gb|EE017166.2|EE017166
EST:     CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAG                         ATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
genomic: CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAGgttaaatgtt ... ttctgtgcagATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
EST: gi|211141166|gb|FL018628.1|FL018628
EST:     CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAG                         ATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
genomic: CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAGgttaaatgtt ... ttctgtgcagATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
EST: gi|211475990|gb|FL018622.1|FL018622
EST:     CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAG                         ATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
genomic: CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAGgttaaatgtt ... ttctgtgcagATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
EST: gi|211475989|gb|FL018621.1|FL018621
EST:     CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAG                         ATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
genomic: CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAGgttaaatgtt ... ttctgtgcagATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
EST: gi|211141165|gb|FL018627.1|FL018627
EST:     CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAG                         ATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG
genomic: CATCTCTGAGCTACACTCCGCAGTCGCAGCGAAGGATCAATCTGAACAAGgttaaatgtt ... ttctgtgcagATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcctgtaatggaaattctgtaaggttttcttctcattcactgaacttctgtgcagATGCTCCAGATGTTGATGATGATTTTGAGAAATTTCAGAAGGAGGTTATCGAAGCCGAGACAGAGGTGAAGGCCTTGAAAGGCAATGATGTGGACCAGCA
                                            cttctgt  CT-rich tract
           aaattct  TA-rich tract