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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcattgccgttgttacccgatgcttactcagtagccgtagtacatgtacattccatattctccatgtcatgatctgtggtgaactggtgtctatgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG

Basic information

species Zea mays
transcript GRMZM2G171469_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211394911|gb|FL373461.1|FL373461
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|211280348|gb|FL373309.1|FL373309
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|211494351|gb|FL425169.1|FL425169
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|78108686|gb|DV527104.1|DV527104
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|32870547|gb|CF010229.1|CF010229
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGTG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|211249778|gb|FL400508.1|FL400508
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|149017006|gb|EE045660.2|EE045660
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|211542534|gb|FL409062.1|FL409062
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|211330706|gb|FL425856.1|FL425856
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|91873273|gb|EB403230.1|EB403230
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|78108178|gb|DV526596.1|DV526596
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|71322323|gb|DR797838.1|DR797838
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|211015090|gb|FL429494.1|FL429494
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGTG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|211278771|gb|FL390080.1|FL390080
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|74237785|gb|DT645699.1|DT645699
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|50339374|gb|CO534500.1|CO534500
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|76018861|gb|DT946031.1|DT946031
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|5895618|gb|AW036864.1|AW036864
EST:     GCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGTG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|211503826|gb|FL372211.1|FL372211
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|211060391|gb|FL405187.1|FL405187
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|211461108|gb|FL380552.1|FL380552
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|50333507|gb|CO528633.1|CO528633
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|211194228|gb|FL384757.1|FL384757
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|71770532|gb|DR968469.1|DR968469
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|149075806|gb|EE164341.2|EE164341
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
EST: gi|211199876|gb|FL416104.1|FL416104
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTTGTACTGCG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTT-GTACTGCG
EST: gi|211195060|gb|FL425764.1|FL425764
EST:     GYGGACAACGCAGAAGGTGTYCCATTTCCTAAACGTCATTGTCAATGGTG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGC
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGC
EST: gi|211158139|gb|FL392767.1|FL392767
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCA-CTTGTACACCCT
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCT
EST: gi|211504995|gb|FL428970.1|FL428970
EST:     GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCG                         TGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG
genomic: GTGGACAACGCAGAAGGTGTTCCATTTCCTAAACGTCATTGTCAATGGCGgtgagttcat ... atgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattccatattctccatgtcatgatctgtggtgaactggtgtctatgtatgcagTGAGGTCAACCGAGTTTGTACTGCGGCGGGATGTGCAACTTGTACACCCTGAG
       atattct  TA-rich tract