Sequence
atgc intronic sequence ATGC exonic sequencegtaagcacctgtttctccatggaccatggctatgtttagcatcctccgtttggatttcgatgtgtgagtgtttgtgtctccctgccttctctcccatctggggggtacagTTACGCTGCAGGCACAGAAAGATTACCCACCAGACATGCAATGCAAGGATAAATTCTTGATTCAGAGCACGAAGGTGGCCGCCAGTACCGACATGGATGA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G171406_T06 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os10g40140.1 (Oryza sativa), 3'ss of exon 4
gtaagcacctgtttctccatggaccatg----gctatgtttagc---atcctccgtttggatttcgatgtg---tgagtgtttgtgtctccctgccttctctcccatctggggggtacagTTACGCTGCAGGCACAGAAAGATTACCCACCAGACATGCAATGCAAGGATAAATTCTTGATTCAGAGCACGAAGGTGGCCGCCAGTACCGACATGGATGA
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gtaaatacatgtttccagtttggctattttatggcgtgccaagccatggctctctttaggctcattatttggtcttgatgtttggatatatatatctgcattgttgttcggtga-tgtagTTACGCTCCAGGCGCAGAAAGAGTACCCACCAGATATGCAATGCAAGGATAAATTCTTGATCCAGAGCACCAAGGTAGCTGCCAGTACTGACATGGACGA
upper sequence: GRMZM2G171406_T06 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g43594.1 (Oryza sativa), 3'ss of exon 4
-----------------------------------gtaagcacctgtttctccatggaccatggc----tatgtttagcatc--ctccgtttggatttcgatgtgtgagtgtttgtgtctccctgccttctctcccatctggggggtacagTTACGCTGCAGGCACAGAAAGATTACCCACCAGACATGCAATGCAAGGATAAATTCTTGATTCAGAGCACGAAGGTGGCCGCCAGTACCGACATGGATGA
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gtaaatacatgtttccaattcttgcacaataacaagtaaatacatgtttccagttttgccattttctagtatgccaagcagtggttctctttaggcttct-tgtttc-gtcttgatatttggatatctgcattcttgtttgttgg-tgtagTTACGCTCCAGGCGCAGAAAGAGTACCCACAAGATATGCAATGCAAGGATAAGTTCTTGATTCAGAGCACTAGGGTAGCTGCCAGTACTGACATGGACGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|78109409|gb|DV527825.1|DV527825EST: CCGGCCGAACGCGAGCATCGTCCAGCCATGGGATTCTTGCACAATAACGA TTACGCTGCAGGCACAGAAAGATTACCCACCAGACATGCAATGCAAGGATA
genomic: CCGGCCGAACGCGAGCATCGTCCAGCCATGGGATTCTTGCACAATAACGAgtaagcacct ... gggggtacagTTACGCTGCAGGCACAGAAAGATTACCCACCAGACATGCAATGCAAGGATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagcacctgtttctccatggaccatggctatgtttagcatcctccgtttggatttcgatgtgtgagtgtttgtgtctccctgccttctctcccatctggggggtacagTTACGCTGCAGGCACAGAAAGATTACCCACCAGACATGCAATGCAAGGATAAATTCTTGATTCAGAGCACGAAGGTGGCCGCCAGTACCGACATGGATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA