1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtagtaccataagcttcgattatcagttcagttttgctgaatcatcagacgctcgaggaacttgaaactgaaataatgcagGTGGTGGAGGTCCTCAACCCTCTGGCGAGGGAGTTCAAGTCCATCGGGACCTTGAGGAAAGAGCTCGCCGAGCTACAGCAGGAGCTGGAAAAAGCTCACA
species | Zea mays |
transcript | GRMZM2G171390_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACTGGAGGGCGCGCCAGGATCTCCTCACCATCATGCTTCTCCACAGCAAG GTGGTGGAGGTCCTCAACCCTCTGGCGAGGGAGTTCAAGTCCATCGGGACCEST: gi|71447084|gb|DR828134.1|DR828134
genomic: ACTGGAGGGCGCGCCAGGATCTCCTCACCATCATGCTTCTCCACAGCAAGgtagtaccat ... aataatgcagGTGGTGGAGGTCCTCAACCCTCTGGCGAGGGAGTTCAAGTCCATCGGGACC
EST: ACTGGAGGGCGCGCCAGGATCTCCTCACCATCATGCTTCTCCACAGCAAG GTGGTGGAGGTCCTCAACCCTCTGGCGAGGGAGTTCAAGTCCATCGGGACCEST: gi|211346611|gb|FL190888.1|FL190888
genomic: ACTGGAGGGCGCGCCAGGATCTCCTCACCATCATGCTTCTCCACAGCAAGgtagtaccat ... aataatgcagGTGGTGGAGGTCCTCAACCCTCTGGCGAGGGAGTTCAAGTCCATCGGGACC
EST: ACTGGAGGGCGCGCCAGGATCTCCTCACCATCATGCTTCTCCACAGCAAG GTGGTGGAGGTCCTCAACCCTCTGGCGAGGGAGTTCAAGTCCATCGGGACCEST: gi|76935489|gb|DV174344.1|DV174344
genomic: ACTGGAGGGCGCGCCAGGATCTCCTCACCATCATGCTTCTCCACAGCAAGgtagtaccat ... aataatgcagGTGGTGGAGGTCCTCAACCCTCTGGCGAGGGAGTTCAAGTCCATCGGGACC
EST: ACTGGAGGGCGCGCCAGGATCTCCTCACCATCATGCTTCTCCACAGCAAG GTGGTGGAGGTCCTCAACCCTCTGGCGAGGGAGTTCAAGTCCATCGGGACCEST: gi|101394335|gb|EB819102.1|EB819102
genomic: ACTGGAGGGCGCGCCAGGATCTCCTCACCATCATGCTTCTCCACAGCAAGgtagtaccat ... aataatgcagGTGGTGGAGGTCCTCAACCCTCTGGCGAGGGAGTTCAAGTCCATCGGGACC
EST: ACTGGAGGGCGCGCCAGGATCTCCTCACCATCATGCTTCTCCACAGCAAG GTGGTGGAGGTCCTCAACCCTCTGGCGAGGGAGTTCAAGTCCATCGGGACCEST: gi|78085618|gb|DV514011.1|DV514011
genomic: ACTGGAGGGCGCGCCAGGATCTCCTCACCATCATGCTTCTCCACAGCAAGgtagtaccat ... aataatgcagGTGGTGGAGGTCCTCAACCCTCTGGCGAGGGAGTTCAAGTCCATCGGGACC
EST: CTGGAGGGCGCGCCAGGATCTCCTCACCATCATGCTTTCTCCACAGCAAG GTGGTGGAGGTCCTCAACCCTCTGGCGAGGGAGTTCAAGTCCATCGGGACC
genomic: CTGGAGGGCGCGCCAGGATCTCCTCACCATCATGCTT-CTCCACAGCAAGgtagtaccat ... aataatgcagGTGGTGGAGGTCCTCAACCCTCTGGCGAGGGAGTTCAAGTCCATCGGGACC
ttcagttttgctgaatcatcagacgctcgaggaacttgaaactgaaataatgcagGTGGTGGAGGTCCTCAACCCTCTGGCGAGGGAGTTCAAGTCCATCGGGACCTTGAGGAAAGAGCTCGCCGAGCTACAGCAGGAGCTGGAAAAAGCTCACA
tgaaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtaccataagcttcgattatcagttcagttttgctgaatcatcagacgctcgaggaacttgaaactgaaataatgcagGTGGTGGAGGTCCTCAACCCTCTGGCGAGGGAGTTCAAGTCCATCGGGACCTTGAGGAAAGAGCTCGCCGAGCTACAGCAGGAGCTGGAAAAAGCTCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA