1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gcatgtatcattagatactttttttgatcctcctattatttgttttttgctaactacaaagtataaccttgtcattctcatgtataatgtatttatcatttgttacccattgtactgataccagATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCCAATGGTGAAGAAAAAATTATTACTTATGCCAAACCGAAGCACCATTCA
species | Zea mays |
transcript | GRMZM2G171354_T05 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCTGCGTTAAGGCTGAAAAGGGACCATGGAAGGACCCAAACATACTTAAG ATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCCEST: gi|6194954|gb|AW147058.1|AW147058
genomic: GCTGCCTTAAGGCTGAAAAGGGACCATGGAAGGACCCAAACATACTTAAGgcatgtatca ... ctgataccagATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCC
EST: CCCAAACATACTTAAG ATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCCEST: gi|71447517|gb|DR828567.1|DR828567
genomic: CCCAAACATACTTAAGgcatgtatca ... ctgataccagATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCC
EST: GCTGCCTTAAGGCTGAAAAGGGACCATGGAAGGACCCAAACATACTTAAG ATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCCEST: gi|6695723|gb|AW288801.1|AW288801
genomic: GCTGCCTTAAGGCTGAAAAGGGACCATGGAAGGACCCAAACATACTTAAGgcatgtatca ... ctgataccagATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCC
EST: CCCAAACATACTTAAG ATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCC
genomic: CCCAAACATACTTAAGgcatgtatca ... ctgataccagATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCC
tgtcattctcatgtataatgtatttatcatttgttacccattgtactgataccagATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCCAATGGTGAAGAAAAAATTATTACTTATGCCAAACCGAAGCACCATTCA
tactgat putative branch site (score: 84)
tataatgtatttatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatgtatcattagatactttttttgatcctcctattatttgttttttgctaactacaaagtataaccttgtcattctcatgtataatgtatttatcatttgttacccattgtactgataccagATAGTCCAAAGTGGTGAGGTTCATTGTGCTCGTCAAATTGTAACTATTTCCAATGGTGAAGAAAAAATTATTACTTATGCCAAACCGAAGCACCATTCA
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