1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaattctgatccttccactgtactttttaataaaaattctcactggttttcaatctgctctagatctaatggttgtgcccttactctcagATTGAAACTTAAGGCTGTATATATGTATGCTGCTGGATTCTACACATATTCCATATTTGCACTTATGTTTTGGGAAACAAGGCGTTCAGACTTTGGAGTG
species | Zea mays |
transcript | GRMZM2G170868_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TATTTTTGGGTAGGACCAGGAGAACAGGTCTGGCCTGATCAAAAGATAAA ATTGAAACTTAAGGCTGTATATATGTATGCTGCTGGGATTCTACACATATTEST: gi|78085862|gb|DV514255.1|DV514255
genomic: TATTTTTGGGTAGGACCAGGAGAACAGGTCTGGCCTGATCAAAAGATAAAgtaattctga ... ttactctcagATTGAAACTTAAGGCTGTATATATGTATGCTGCTGG-ATTCTACACATATT
EST: TATTTTTGGGTAGGACCAGGAGAACAGGTCTGGCCTGATCAAAAGATAAA ATTGAAACTTAAGGCTGTATATATGTATGCTGCTGGATTCTACACATATTC
genomic: TATTTTTGGGTAGGACCAGGAGAACAGGTCTGGCCTGATCAAAAGATAAAgtaattctga ... ttactctcagATTGAAACTTAAGGCTGTATATATGTATGCTGCTGGATTCTACACATATTC
attctcactggttttcaatctgctctagatctaatggttgtgcccttactctcagATTGAAACTTAAGGCTGTATATATGTATGCTGCTGGATTCTACACATATTCCATATTTGCACTTATGTTTTGGGAAACAAGGCGTTCAGACTTTGGAGTG
cccttactctc CT-rich tract
ttttcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattctgatccttccactgtactttttaataaaaattctcactggttttcaatctgctctagatctaatggttgtgcccttactctcagATTGAAACTTAAGGCTGTATATATGTATGCTGCTGGATTCTACACATATTCCATATTTGCACTTATGTTTTGGGAAACAAGGCGTTCAGACTTTGGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG