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...tgattgtctatattattatgttattgatgtttttttagatataaaacaaatacattcctttttacttttattaacagaatcactattcttccatttgtagTTAATGTGTATGTCCCAAAAGACAGAGTTACAAATTTACACCAGGGATATGGATTTGTAGAATTCAGGAGTGAGGAAGATGCAGATTAT
species | Zea mays |
transcript | GRMZM2G170699_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTG TTAATGTGTATGTCCCAAAAGACAGAGTTACAAATTTACACCAGGGATATGEST: gi|89248214|gb|DY620000.1|DY620000
genomic: GTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTGgtaagtggac ... ccatttgtagTTAATGTGTATGTCCCAAAAGACAGAGTTACAAATTTACACCAGGGATATG
EST: GTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTG TTAATGTGTATGTCCCAAAAGACAGAGTTACAAATTTACACCAGGGATATGEST: gi|88746230|gb|DY530371.1|DY530371
genomic: GTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTGgtaagtggac ... ccatttgtagTTAATGTGTATGTCCCAAAAGACAGAGTTACAAATTTACACCAGGGATATG
EST: GTTTCAGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTG TTAATGTGTATGTCCCAAAAGACAGAGTTACAAATTTACACCAGGGATATGEST: gi|78124096|gb|DV542480.1|DV542480
genomic: GTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTGgtaagtggac ... ccatttgtagTTAATGTGTATGTCCCAAAAGACAGAGTTACAAATTTACACCAGGGATATG
EST: GTTTCAGAGGAGCTTCTATGGAAATTATTTGTCCAAGCAGGCCCTGTTG TTAATGTGTATGTCCCAAAAGACAGAGTTACAAATTTACACCAGGGATATGEST: gi|21843149|gb|BQ703730.1|BQ703730
genomic: GTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTGgtaagtggac ... ccatttgtagTTAATGTGTATGTCCCAAAAGACAGAGTTACAAATTTACACCAGGGATATG
EST: GTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTG TTAATGTGTATGTCCCAAAAGACAGAGTTACAAATTTACACCAGGGATATGEST: gi|101395862|gb|EB819858.1|EB819858
genomic: GTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTGgtaagtggac ... ccatttgtagTTAATGTGTATGTCCCAAAAGACAGAGTTACAAATTTACACCAGGGATATG
EST: GTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTG TTAATGTGTATGTCCCAAAAGACAGAGTTACAAATTTACACCAGGGATATG
genomic: GTTTCCGAGGAGCTTCTATGGGAATTATTTGTCCAAGCAGGCCCTGTTGgtaagtggac ... ccatttgtagTTAATGTGTATGTCCCAAAAGACAGAGTTACAAATTTACACCAGGGATATG
acaaatacattcctttttacttttattaacagaatcactattcttccatttgtagTTAATGTGTATGTCCCAAAAGACAGAGTTACAAATTTACACCAGGGATATGGATTTGTAGAATTCAGGAGTGAGGAAGATGCAGATTAT
tattaac putative branch site (score: 45)
ctattcttccattt putative PPT
tttttacttttattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgattgtctatattattatgttattgatgtttttttagatataaaacaaatacattcctttttacttttattaacagaatcactattcttccatttgtagTTAATGTGTATGTCCCAAAAGACAGAGTTACAAATTTACACCAGGGATATGGATTTGTAGAATTCAGGAGTGAGGAAGATGCAGATTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
tgattgt
- - - - - - - -ttatgtt
- - - - - - - - - - - - tgatgtt
- - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacagaa