1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcctagattatgatttctatctgtgtcgtttgctacattggattcagtggcttgacaacaaaattgttacattactgtcatacttcttgatgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGTGGTCTCTTTCAGATTCAAAATATGCTGGGACAGCTATGTTTATAAAGA
species | Zea mays |
transcript | GRMZM2G170291_T04 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|71770443|gb|DR968380.1|DR968380
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTTCAA-GACTACCGTGTCTGEST: gi|211194081|gb|FL030608.1|FL030608
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTT-CAAAGACTACCGTGTCTG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTCGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|211261839|gb|FL294946.1|FL294946
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAEST: gi|211321949|gb|FK966255.1|FK966255
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAA
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCASCTTTCAAAGACTACCGTGTCTGGEST: gi|94475567|gb|EB704525.1|EB704525
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|71431551|gb|DR812601.1|DR812601
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|149095617|gb|EE168978.2|EE168978
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|76018500|gb|DT945670.1|DT945670
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|40287182|gb|CK327574.1|CK327574
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|71771442|gb|DR969379.1|DR969379
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|211194080|gb|FL030607.1|FL030607
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|211471748|gb|FL295692.1|FL295692
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|91872355|gb|EB402312.1|EB402312
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|78074005|gb|DV502439.1|DV502439
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|84980468|gb|DW530817.1|DW530817
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|211194082|gb|FL030609.1|FL030609
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|76016191|gb|DT943361.1|DT943361
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|76021196|gb|DT948366.1|DT948366
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|50330655|gb|CO525781.1|CO525781
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|74236588|gb|DT644502.1|DT644502
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|50332550|gb|CO527676.1|CO527676
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|50325227|gb|CO520353.1|CO520353
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|89757612|gb|DY687140.1|DY687140
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGEST: gi|76010861|gb|DT938031.1|DT938031
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
EST: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAG GTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
genomic: ACCCCAGTGAACTAAAAGATGACACAAGCTTGTCACGGGATGAAAAGCAGgttttttggc ... tgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGG
agtggcttgacaacaaaattgttacattactgtcatacttcttgatgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGTGGTCTCTTTCAGATTCAAAATATGCTGGGACAGCTATGTTTATAAAGA
tcttgat putative branch site (score: 4)
aaaattgttacatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctagattatgatttctatctgtgtcgtttgctacattggattcagtggcttgacaacaaaattgttacattactgtcatacttcttgatgtcaagcagGTAGTTCTACGTGCTTTGTCAGCTTCACCTTTCAAAGACTACCGTGTCTGGTGGTCTCTTTCAGATTCAAAATATGCTGGGACAGCTATGTTTATAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - tgctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aacaaaa