1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatggatttgtgttgcttcaatgctcgctacgtgtgatttcctcccggcacggatctcgcaatgtgatgcagtgctgctgctgctgctgcagGCGGATGCGGTGGGCGTGGGGAAGGTGCGGCACAAGCGCCTCGTCAACCTCATTGGCTGCTGCGCCGAGGGTGACGAGAGGCTGCTCGTCGCTGAGTACA
species | Zea mays |
transcript | GRMZM2G169080_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCGTCAAACGCTTCTCGCGCCTCTCTTGGCCTGACCCGCAGCAGTTCCTC GCGGATGCGGTGGGCGTGGGGAAGGTGCGGCACAAGCGCCTCGTCAACCTCEST: gi|20208120|gb|BQ134194.1|BQ134194
genomic: CCGTCAAACGCTTCTCGCGCCTCTCTTGGCCTGACCCGCAGCAGTTCCTCgtatggattt ... gctgctgcagGCGGATGCGGTGGGCGTGGGGAAGGTGCGGCACAAGCGCCTCGTCAACCTC
EST: CCGTCAAACGCTTCTCGCGCCTCTCTTGGCCTGACCCGCAGCAGCTCCTC GCGGATGCGGTGGGCGTGGGGAAGGTGCGGCACAAGCGCCTCEST: gi|29543586|gb|CB603966.1|CB603966
genomic: CCGTCAAACGCTTCTCGCGCCTCTCTTGGCCTGACCCGCAGCAGTTCCTCgtatggattt ... gctgctgcagGCGGATGCGGTGGGCGTGGGGAAGGTGCGGCACAAGCGCCTC
EST: CCGTCAAACGCTTCTCGCGCCTCTCTTGGCCTGACCCGCAGCAGTTCCTC GCGGATGCGGTGGGCGTGGGGAAGGTGCGGCACAAGCGCCTCGTCAACCTCEST: gi|50336036|gb|CO531162.1|CO531162
genomic: CCGTCAAACGCTTCTCGCGCCTCTCTTGGCCTGACCCGCAGCAGTTCCTCgtatggattt ... gctgctgcagGCGGATGCGGTGGGCGTGGGGAAGGTGCGGCACAAGCGCCTCGTCAACCTC
EST: CCGTCAAACGCTTCTCGCGCCTCTCTTGGCCTGACCCGCAGCAGTTCCTC GCGGATGCGGTGGGCGTGGGGAAGGTGCGGCACAAGCGCCTCGTCAACCTCEST: gi|26456110|gb|CA827693.1|CA827693
genomic: CCGTCAAACGCTTCTCGCGCCTCTCTTGGCCTGACCCGCAGCAGTTCCTCgtatggattt ... gctgctgcagGCGGATGCGGTGGGCGTGGGGAAGGTGCGGCACAAGCGCCTCGTCAACCTC
EST: CCGTCAAACGCTTCTCGCGCCTCTCTTGGCCTGACCCGCAGCAGTTCCTC GCGGATGCGGTGGGCGTGGGGAAGGTGCGGCACAAGCGCCTCGTCAACCTC
genomic: CCGTCAAACGCTTCTCGCGCCTCTCTTGGCCTGACCCGCAGCAGTTCCTCgtatggattt ... gctgctgcagGCGGATGCGGTGGGCGTGGGGAAGGTGCGGCACAAGCGCCTCGTCAACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggatttgtgttgcttcaatgctcgctacgtgtgatttcctcccggcacggatctcgcaatgtgatgcagtgctgctgctgctgctgcagGCGGATGCGGTGGGCGTGGGGAAGGTGCGGCACAAGCGCCTCGTCAACCTCATTGGCTGCTGCGCCGAGGGTGACGAGAGGCTGCTCGTCGCTGAGTACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT