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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtagctagtaggctgcctttctatagattcgatcaaaaggcgaatcgatatggaagacgacagcgatgatagatgagctattgttttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAG

Basic information

species Zea mays
transcript GRMZM2G169005_T02
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211184115|gb|FL126403.1|FL126403
EST:     GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG                         GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: gi|86470243|gb|DY236613.1|DY236613
EST:     GTCGGCTGGGTGAGTTCCTCAAGGCTCGTTTTGAAAAGCTAGATATCCTG                         GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: gi|211184114|gb|FL126402.1|FL126402
EST:     GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG                         GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: gi|211181714|gb|FL126396.1|FL126396
EST:     GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG                         GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: gi|13178344|gb|BG349602.1|BG349602
EST:     GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG                         GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: gi|71308191|gb|DR790329.1|DR790329
EST:     GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG                         GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: gi|71303157|gb|DR787684.1|DR787684
EST:     GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG                         GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: gi|211181715|gb|FL126397.1|FL126397
EST:     GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG                         GTAAATAATGCCGCAGTTGGTG
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTG
EST: gi|211184113|gb|FL126401.1|FL126401
EST:     GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG                         STAAATAATGCCGCAGTTGGTGCTGTTGAGTACGT
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGT
EST: gi|211181712|gb|FL126394.1|FL126394
EST:     GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG                         GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: gi|93015425|gb|EB640945.1|EB640945
EST:     GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG                         GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGGTGAC
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: gi|211181713|gb|FL126395.1|FL126395
EST:     GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG                         GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: gi|211181718|gb|FL126400.1|FL126400
EST:     GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG                         GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: gi|78088419|gb|DV516812.1|DV516812
EST:     GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG                         GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaatcgatatggaagacgacagcgatgatagatgagctattgttttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAG
                                        ttgtttt  CT-rich tract
                                      tattgttttgtatata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtacgtagctagtaggctgcctttctatagattcgatcaaaaggcgaatcgatatggaagacgacagcgatgatagatgagctattgttttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA