1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacgtagctagtaggctgcctttctatagattcgatcaaaaggcgaatcgatatggaagacgacagcgatgatagatgagctattgttttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAG
species | Zea mays |
transcript | GRMZM2G169005_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGACEST: gi|86470243|gb|DY236613.1|DY236613
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: GTCGGCTGGGTGAGTTCCTCAAGGCTCGTTTTGAAAAGCTAGATATCCTG GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGACEST: gi|211184114|gb|FL126402.1|FL126402
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGACEST: gi|211181714|gb|FL126396.1|FL126396
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGACEST: gi|13178344|gb|BG349602.1|BG349602
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGACEST: gi|71308191|gb|DR790329.1|DR790329
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGACEST: gi|71303157|gb|DR787684.1|DR787684
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGACEST: gi|211181715|gb|FL126397.1|FL126397
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG GTAAATAATGCCGCAGTTGGTGEST: gi|211184113|gb|FL126401.1|FL126401
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTG
EST: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG STAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTEST: gi|211181712|gb|FL126394.1|FL126394
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGT
EST: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGACEST: gi|93015425|gb|EB640945.1|EB640945
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGGTGACEST: gi|211181713|gb|FL126395.1|FL126395
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGACEST: gi|211181718|gb|FL126400.1|FL126400
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGACEST: gi|78088419|gb|DV516812.1|DV516812
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
EST: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTG GTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
genomic: GTCGGCTGGCTGAGTTCCTCAAGGCTCGTTTTGGAAAGCTAGATATCCTGgtacgtagct ... ttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGAC
cgaatcgatatggaagacgacagcgatgatagatgagctattgttttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAG
ttgtttt CT-rich tract
tattgttttgtatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtagctagtaggctgcctttctatagattcgatcaaaaggcgaatcgatatggaagacgacagcgatgatagatgagctattgttttgtatatagGTAAATAATGCCGCAGTTGGTGCTGTTGAGTACGTCCAAGATCCTGCTGACAGTTCAACGAGCGAGGAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA