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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgggtgttaccagctagggccttcgatttttgttcacgcacggcacctgcttgctcttttgcttcccgcaacccaatcaaccgacaaaaaactgttaggcagtttctaaatcttgactgttttcactggcagTGCCCAAGGCGTTCCGGGAGGCGTTGCTTGGCGCTGGGTGGAGTGTTGGCCGGTCGCCAGTGCACCACGCCGTCACAGCCTCGGATGGCACTACCAAG

Basic information

species Zea mays
transcript GRMZM2G168412_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G168412_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g74190.1 (Oryza sativa), 3'ss of exon 2
gtgggtgttaccagctagggccttcgatttttgttcacgcacggcacctgcttgctcttttgcttcccgcaacccaatcaaccgacaaaaaactgttaggcagtttctaaatcttgact-gttttcactggcagTGCCCAAGGCGTTCCGGGAGGCGTTGCTTGGCGCTGGGTGGAGTGTTGGCCGGTCGCCAGTGCACCACGCCGTCACAGCCTCGGATGGCACTACCAAG
      || |   ||||  ||    |      |   | ||||| |||||| ||| | ||||||| |                        | | || |||           |||||||| | ||  |   ||||| || |||| |||||| ||||| ||| | |||||||| ||||  |||||||| |||||||||||||| || || || ||||| |||||||||||||||
------gtaatgtgctaaagctcctg-ccggggacaatgcacgccacctgtttgttgttttgctcc-----------------------gagccgtcaggt----------tcttgactcgcttgtatgtgcagTACCAAAGGTGTTCCGTGAGGCCTTGGTCGGCGCTGGCTGGAAGGTTGGCCGCTCGCCAGTGCACCATGCTGTGACGGCCTCCGATGGCACTACCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13150086|gb|BG320408.1|BG320408
EST:     CGACCTCCTCTACAAATCAAGAGCCAAGCAAATCCAAGAATTCAACCACG                         TGCCCAAGGCGTTCCGGGAGGCGTTGCTTGGCGCTGGGTGGAGTGTTGGCC
genomic: CGACCTCCTCTACAAATCAAGAGCCAAGCAAATCCAAGAATTCAACCACGgtgggtgtta ... tcactggcagTGCCCAAGGCGTTCCGGGAGGCGTTGCTTGGCGCTGGGTGGAGTGTTGGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaccgacaaaaaactgttaggcagtttctaaatcttgactgttttcactggcagTGCCCAAGGCGTTCCGGGAGGCGTTGCTTGGCGCTGGGTGGAGTGTTGGCCGGTCGCCAGTGCACCACGCCGTCACAGCCTCGGATGGCACTACCAAG
                                       ctgttttc  CT-rich tract
                         tttctaaat  TA-rich tract