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gtgagtctgcactctacatgtatctagtcttccatcttctgccattactaaagctaacctccccatgccattaagaataactggttattaaaatgacttttatgctgttagATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCAGTGATCAATTGGTTCAACCATCTACTATTCTCCTTTCCTTAGATCAGAT
species | Zea mays |
transcript | GRMZM2G168337_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTCCCTTGTGTGAGGCTGTTGAATCTTTCTGGTGAAATTGGCTGTTCTA ATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCAEST: gi|78116310|gb|DV534697.1|DV534697
genomic: CTTCCCTTGTGTGAGGCTGTTGAATCTTTCTGGTGAAATTGGCTGTTCTAgtgagtctgc ... atgctgttagATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCA
EST: CTTCCCTTGTGTGAGGCTGTTGAATCTTTCTGGTGAAATTGGCTGTTCTA ATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCAEST: gi|31354773|gb|CD439130.1|CD439130
genomic: CTTCCCTTGTGTGAGGCTGTTGAATCTTTCTGGTGAAATTGGCTGTTCTAgtgagtctgc ... atgctgttagATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCA
EST: CTTCCCTTGTGTGAGGCTGTTGAATCTTTCTGGTGAAATTGGCTGTTCTA ATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCAEST: gi|78112707|gb|DV531101.1|DV531101
genomic: CTTCCCTTGTGTGAGGCTGTTGAATCTTTCTGGTGAAATTGGCTGTTCTAgtgagtctgc ... atgctgttagATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCA
EST: CTTCCCTTGTGTGAGGCTGTTGAATCTTTCTGGTGAAATTGGCTGTTCTA ATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCAEST: gi|18162105|gb|BM331944.1|BM331944
genomic: CTTCCCTTGTGTGAGGCTGTTGAATCTTTCTGGTGAAATTGGCTGTTCTAgtgagtctgc ... atgctgttagATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCA
EST: CTTCCCTTGTGTGAGGCTGTTGAATCTTTCTGGTGAAATTGGCTGTTCTA ATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCAEST: gi|76021581|gb|DT948751.1|DT948751
genomic: CTTCCCTTGTGTGAGGCTGTTGAATCTTTCTGGTGAAATTGGCTGTTCTAgtgagtctgc ... atgctgttagATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCA
EST: CTTCCCTTGTGTGAGGCTGTTGAATCTTTCTGGTGAAATTGGCTGTTCTA ATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCAEST: gi|4730494|gb|AI649660.1|AI649660
genomic: CTTCCCTTGTGTGAGGCTGTTGAATCTTTCTGGTGAAATTGGCTGTTCTAgtgagtctgc ... atgctgttagATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCA
EST: CTTCCCTTGTGTGAGGCTGTTGAATCTTTCTGGTGAAATTGGCTGTTCTA ATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCAEST: gi|149076346|gb|EE164962.2|EE164962
genomic: CTTCCCTTGTGTGAGGCTGTTGAATCTTTCTGGTGAAATTGGCTGTTCTAgtgagtctgc ... atgctgttagATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCA
EST: CTTCCCTTGTGTGAGGCTGTTGAATCTTTCTGGTGAAATTGGCTGTTCTA ACCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCA
genomic: CTTCCCTTGTGTGAGGCTGTTGAATCTTTCTGGTGAAATTGGCTGTTCTAgtgagtctgc ... atgctgttagATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCA
acctccccatgccattaagaataactggttattaaaatgacttttatgctgttagATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCAGTGATCAATTGGTTCAACCATCTACTATTCTCCTTTCCTTAGATCAGAT
gaataac putative branch site (score: 46)
cttttat putative PPT
ttattaaaatgacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtctgcactctacatgtatctagtcttccatcttctgccattactaaagctaacctccccatgccattaagaataactggttattaaaatgacttttatgctgttagATCCTGGAAGTGAGAAGGTCATTGCACCAATTGTAAGACTTAGAAAAGGCAGTGATCAATTGGTTCAACCATCTACTATTCTCCTTTCCTTAGATCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA