Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|87151860|gb|DY396649.1|DY396649EST: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST:
gi|60346411|gb|DN213384.1|DN213384EST: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST:
gi|4298917|gb|AI438830.1|AI438830EST: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST:
gi|19436106|gb|BM952516.1|BM952516EST: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST:
gi|22491095|gb|BU051018.1|BU051018EST: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAG GTTCTATCCCCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
EST:
gi|5901405|gb|AW042505.1|AW042505EST: AGCCATGGCAAAAANCAAAGCCATGTATTGAGATATTGTGCAATAACCAG GTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
genomic: AGCCATGGCAAAAAACAAAGCCATGTATTGAGATATTGTGCAATAACCAGgtaagttctc ... tgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.attctctgcatagtctgtcttttgctgttgcgctcacgtgttctctgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAAAAGCCAGAAGATTTGATTCTTCATTACAGAGTGGTCCAACCGAGATGAT
cgctcac putative branch site (score: 3)
tgttctct CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atttttctcgatctattcatgtggcctgcattatattataaagcaattctctgcatagtctgtcttttgctgttgcgctcacgtgttctctgtggctcagGTTCTATCACCAGAGATGAGTTTGGCTACTGTGCGAACATATATATGGAAAAAGCCAGAAGATTTGATTCTTCATTACAGAGTGGTCCAACCGAGATGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG