1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gcaccaatgaactatatctgttaccaaacaatttctttttaactgttaatgccaacaatcatctgctgagtgtgcctcattttccctatcttattaccagAAACATTTTTAGTCTATTAGCTCAGCGGGAGCTCTCACCTCGAACAAAAAACCAAGCAAAAAATCTTTGGACCAAACCTCCAAGACTTGATGCTTGTCCT
species | Zea mays |
transcript | GRMZM2G167886_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CCAGAGTCAGTTTCTAGACATGAAACATCAATACCAAGAACAAAGCAAAG AAACATTTTTAGTCTATTAGCTCAGCGGGAGCTCTCACCTCGAACAAAAAAEST: gi|18384882|gb|BM418081.1|BM418081
genomic: CCAGAGTCAGTTTCTAGACATGAAACATCAATACCAAGAACAAAGCAAAGgttaaactga ... ttattaccagAAACATTTTTAGTCTATTAGCTCAGCGGGAGCTCTCACCTCGAACAAAAAA
EST: CAGAGTCAGTTTCTAGTACATGAAACATCAATACCAAGAACAAAGCAAAG AAACATTTTTAGTCTATTAGCTCAGCGGGAGCTCTCACCTCGAACAAAAAAEST: gi|18384881|gb|BM418080.1|BM418080
genomic: CAGAGTCAGTTTCTAG-ACATGAAACATCAATACCAAGAACAAAGCAAAGgttaaactga ... ttattaccagAAACATTTTTAGTCTATTAGCTCAGCGGGAGCTCTCACCTCGAACAAAAAA
EST: CCAGAGTCAGTTTCTAGACATGAAACATCAATACCAAGAACAAAGCAAAG AAACATTTTTAGTCTATTAGCTCAGCGGGAGCTCTCACCTCGAACAAAAAAEST: gi|16746130|gb|BM032560.1|BM032560
genomic: CCAGAGTCAGTTTCTAGACATGAAACATCAATACCAAGAACAAAGCAAAGgttaaactga ... ttattaccagAAACATTTTTAGTCTATTAGCTCAGCGGGAGCTCTCACCTCGAACAAAAAA
EST: CCAGAGTCAGTTTCTAGACATGAAACATCAATACCAAGAACAAAGCAAAG AAACATTTTTAGTCTATTAGCTCAGCGGGAGCTCTCACCTCGAACAAAAAAEST: gi|76015702|gb|DT942872.1|DT942872
genomic: CCAGAGTCAGTTTCTAGACATGAAACATCAATACCAAGAACAAAGCAAAGgttaaactga ... ttattaccagAAACATTTTTAGTCTATTAGCTCAGCGGGAGCTCTCACCTCGAACAAAAAA
EST: CCAGAGTCAGTTTCTAGACATGAAACATCAATACCAAGAACAAAGCAAAG AAACATTTTTAGTCTATTAGCTCAGCGGGAGCTCTCACCTCGAACAAAAAAEST: gi|76909051|gb|DV163198.1|DV163198
genomic: CCAGAGTCAGTTTCTAGACATGAAACATCAATACCAAGAACAAAGCAAAGgttaaactga ... ttattaccagAAACATTTTTAGTCTATTAGCTCAGCGGGAGCTCTCACCTCGAACAAAAAA
EST: CCAGAGTCAGTTTCTAGACATGAAACATCAATACCAAGAACAAAGCAAAG AAACATTTTTAGTCTATTAGCTCAGCGGGAGCTCTCACCTCGAACAAAAAAEST: gi|16746032|gb|BM032462.1|BM032462
genomic: CCAGAGTCAGTTTCTAGACATGAAACATCAATACCAAGAACAAAGCAAAGgttaaactga ... ttattaccagAAACATTTTTAGTCTATTAGCTCAGCGGGAGCTCTCACCTCGAACAAAAAA
EST: CCAGAGTCAGTTTCTAGACATGAAACATCAATACCAAGAACAAAGCAAAG AAACATTTTTAGTCTATTAGCTCAGCGGGAGCTCTCACCTCGAACAAAAAA
genomic: CCAGAGTCAGTTTCTAGACATGAAACATCAATACCAAGAACAAAGCAAAGgttaaactga ... ttattaccagAAACATTTTTAGTCTATTAGCTCAGCGGGAGCTCTCACCTCGAACAAAAAA
ttaatgccaacaatcatctgctgagtgtgcctcattttccctatcttattaccagAAACATTTTTAGTCTATTAGCTCAGCGGGAGCTCTCACCTCGAACAAAAAACCAAGCAAAAAATCTTTGGACCAAACCTCCAAGACTTGATGCTTGTCCT
tgttaat putative branch site (score: 3)
cctcattttccctatc putative PPT
tatcttatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaccaatgaactatatctgttaccaaacaatttctttttaactgttaatgccaacaatcatctgctgagtgtgcctcattttccctatcttattaccagAAACATTTTTAGTCTATTAGCTCAGCGGGAGCTCTCACCTCGAACAAAAAACCAAGCAAAAAATCTTTGGACCAAACCTCCAAGACTTGATGCTTGTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA