Sequence
atgc intronic sequence ATGC exonic sequencegtatgtggtcgtcaagaagcagcagcttattactctttttcttcgagttctgaatcgccgagctgaaacggaggcacctgtctgccctgcagACCATCCTTGGATCAAGGAAGATGGCGAAGCGCCTGACACGCCACTGGACAACGCTGTCATGAACAGGCTGAAGCAGTTCAAGGCGATGAACCAGTTCAA
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G167276_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g59360.1 (Oryza sativa), 3'ss of exon 3
gtatgtggtcgtcaagaagcagcagcttattactctttttcttcgagttctgaatcgccgagctgaaacggaggcacctgtctgccctgcagACCATCCTTGGATCAAGGAAGATGGCGAAGCGCCTGACACGCCACTGGACAACGCTGTCATGAACAGGCTGAAGCAGTTCAAGGCGATGAACCAGTTCAA
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gtacgtgcctcttctggttctccattttgcatcgtttcatttgggatgtttgaaattttaa-ctaacaatgcaatttttggttgttaattagATCACCCGTGGATCAAGGAAGATGGAGAAGCACCTGACACGCCGCTTGACAACGCTGTCATGAACAGGCTCAAGCAGTTCAGGGCTATGAACCAATTCAA
upper sequence: GRMZM2G167276_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA07G36000.1 (Glycine max), 3'ss of exon 3
-------------------------------------------gtatgtggtcgtcaagaagcagcagcttatt---actctttttcttcgagttctgaatcgccgagctgaaacggaggcacctgtc-tgccctg--cagACCATCCTTGGATCAAGGAAGATGGCGAAGCGCCTGACACGCCACTGGACAACGCTGTCATGAACAGGCTGAAGCAGTTCAAGGCGATGAACCAGTTCAA
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gtaagcatatatcctccactgtttttgtttcaccttcaatcaattattttttttacaaaccgcttgaattcacttacaatttcatgatttactaacgaaattgattataataatcggcga-acgtgttatgttaaaaacagATCATCCATGGATCAAGGAGGATGGCGAAGCACCAGATAAACCACTTGACAATGCTGTACTGAATAGGCTGAAACAATTCAGAGCAATGAACCAATTCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|94480373|gb|EB709331.1|EB709331EST: GATGCTCACCTCTGACCCCAAGAAGAGGATATCTGCCTACGACGTCCTCA ACCATCCTTGGATCAAGGAAGATGGGCGAAGCGCCTGACACGCCACTGGAC
genomic: GATGCTCACCTCTGACCCCAAGAAGAGGATCTCTGCCTACGACGTCCTCAgtatgtggtc ... tgccctgcagACCATCCTTGGATCAAGGAAGAT-GGCGAAGCGCCTGACACGCCACTGGAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttcttcgagttctgaatcgccgagctgaaacggaggcacctgtctgccctgcagACCATCCTTGGATCAAGGAAGATGGCGAAGCGCCTGACACGCCACTGGACAACGCTGTCATGAACAGGCTGAAGCAGTTCAAGGCGATGAACCAGTTCAA
tctgccct CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgtggtcgtcaagaagcagcagcttattactctttttcttcgagttctgaatcgccgagctgaaacggaggcacctgtctgccctgcagACCATCCTTGGATCAAGGAAGATGGCGAAGCGCCTGACACGCCACTGGACAACGCTGTCATGAACAGGCTGAAGCAGTTCAAGGCGATGAACCAGTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC