Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgggcataaccagtaatcaccatgctaaacttcatgaactatttgatttgataggcttactgtaagtatgcatgacctgactattttgttgtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCAAGGCTGTGAAGTCTGGGGCAGGCAAGAAGAAGACCAAGAAGATTCGCAC

Basic information

species Zea mays
transcript GRMZM2G166659_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G166659_T04 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g42270.1 (Oryza sativa), 3'ss of exon 2
tgggcataaccagtaatcaccatgctaaacttcatgaactatttgattt--gataggcttactgtaagtatgcatgacctgactattttgttgtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCAAGGCTGTGAAGTCTGGGGCAGGCAAGAAGAAGACCAAGAAGATTCGCAC
   | ||||  |||       || |    || | ||   | ||| |  |  | | ||       | |  |||||||| |||| | |||| || | ||  |||| |||||||||||||||||||||||||||||||| ||||||||||  ||||||||||| ||||||||| ||| |||||||| |||||||||||| |||||
-ttgtataattagtctatga-atccatttctgcctggcttttttaacctcagcttggtgcttaattaagatgcatgaactgattgttttattttgtgtctagCTGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAAGCCTTGAAGGCAGCCAAGGCTGTTAAGTCTGGGACAGCCAAGAAGACGACCAAGAAGATCCGCAC

upper sequence: GRMZM2G166659_T04 (Zea mays), 3'ss of exon 2
lower sequence: AT2G39460.1 (Arabidopsis thaliana), 3'ss of exon 1
tgggcataaccagtaatcaccatgctaaac-ttcatgaacta---tttgatttg-ataggcttactgtaagtatgcatgacctgactattttgttgtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCAAGGCTGTGAAGTCTGG---GGCAGGCAAGAAGAAGACCAAGAAGATTCGCAC
      |   | |||  |    | || |   |||||| | |    |  |||||| ||     || | || | |||| | | ||  || || | |    |    ||  | | || ||||||||| |||| | |||||| |||||||||||| ||| |||||||||||||||||    ||   ||||||||||  ||| |||||| |   
----ttttgtctgtagacgtgtttctgagtattcatgtattgaagtcagatttgtatcaaagtattatatg-atgcttaaactctctgttgtatgtaatttgcagTTGATACTACCAAGAAGGCTGATCCTAAGGCCAAGGCCTTGAAGGCGGCAAAGGCTGTGAAGTCTGGTCAAGCCTTCAAGAAGAAGGACAAAAAGATTAG---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91871654|gb|EB401611.1|EB401611
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211498422|gb|FL241117.1|FL241117
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211135420|gb|FL241165.1|FL241165
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|60337379|gb|DN204352.1|DN204352
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|28361848|gb|CB240204.1|CB240204
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|32909400|gb|CF014212.1|CF014212
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|30704497|gb|CD058540.1|CD058540
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGG-GATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211133537|gb|FL241139.1|FL241139
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211133529|gb|FL241131.1|FL241131
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|9566464|gb|BE475973.1|BE475973
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|213175291|gb|FM183554.1|FM183554
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|9254249|gb|BE344717.1|BE344717
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211134469|gb|FL241143.1|FL241143
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGARGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211495536|gb|FL241105.1|FL241105
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211135424|gb|FL241169.1|FL241169
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|32909399|gb|CF014211.1|CF014211
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|60352021|gb|DN218994.1|DN218994
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|19770439|gb|BQ035160.1|BQ035160
EST:     GCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|84980252|gb|DW530601.1|DW530601
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|87152118|gb|DY396907.1|DY396907
EST:     AAGGAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: AAGGAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|9742933|gb|BE519081.1|BE519081
EST:     AGACGAAAGGAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: AGACGAAAGGAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|60357901|gb|DN224874.1|DN224874
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211135421|gb|FL241166.1|FL241166
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211135412|gb|FL241157.1|FL241157
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|6020325|gb|AW065253.1|AW065253
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211133525|gb|FL241127.1|FL241127
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211136353|gb|FL241171.1|FL241171
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|76288031|gb|DV027599.1|DV027599
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211133526|gb|FL241128.1|FL241128
EST:     GAGGAAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|13237311|gb|BG355325.1|BG355325
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211134475|gb|FL241149.1|FL241149
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|26557771|gb|CA830006.1|CA830006
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|28361660|gb|CB240016.1|CB240016
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211133524|gb|FL241126.1|FL241126
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211498421|gb|FL241116.1|FL241116
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|60356313|gb|DN223286.1|DN223286
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211498417|gb|FL241112.1|FL241112
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|60353507|gb|DN220480.1|DN220480
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211135419|gb|FL241164.1|FL241164
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGRCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211498419|gb|FL241114.1|FL241114
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCARGARGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211133528|gb|FL241130.1|FL241130
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211135422|gb|FL241167.1|FL241167
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211134467|gb|FL241141.1|FL241141
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211134470|gb|FL241144.1|FL241144
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|60357445|gb|DN224418.1|DN224418
EST:     GAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211135417|gb|FL241162.1|FL241162
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|84981002|gb|DW531351.1|DW531351
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211498423|gb|FL241118.1|FL241118
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211135411|gb|FL241156.1|FL241156
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211498420|gb|FL241115.1|FL241115
EST:     GAGGGAGTTTTGAGAAGCYCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211135413|gb|FL241158.1|FL241158
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211133533|gb|FL241135.1|FL241135
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211135415|gb|FL241160.1|FL241160
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|60354289|gb|DN221262.1|DN221262
EST:     AGGAGGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCCAAGGCCCAGGCCTTGAAGGTGGCC
genomic: AGGA-GGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATG-CCAAGGCCCAGGCCTTGAAGGTGGCC
EST: gi|60341795|gb|DN208768.1|DN208768
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211133527|gb|FL241129.1|FL241129
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211498418|gb|FL241113.1|FL241113
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211133532|gb|FL241134.1|FL241134
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211498424|gb|FL241119.1|FL241119
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211134478|gb|FL241152.1|FL241152
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|84980937|gb|DW531286.1|DW531286
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211133531|gb|FL241133.1|FL241133
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211133538|gb|FL241140.1|FL241140
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211498427|gb|FL241122.1|FL241122
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211135418|gb|FL241163.1|FL241163
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|94475909|gb|EB704867.1|EB704867
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211498425|gb|FL241120.1|FL241120
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211134477|gb|FL241151.1|FL241151
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|211133534|gb|FL241136.1|FL241136
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|84980986|gb|DW531335.1|DW531335
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|60400843|gb|DN233650.1|DN233650
EST:     GAGGGAGTTTTGAGAAGCAT-AAATGGCTCCTAAAG                         CCGCTCCTGTCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGC-TCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
EST: gi|9733137|gb|BE511889.1|BE511889
EST:     GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAG                         CCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA
genomic: GAGGGAGTTTTGAGAAGCTCAAATGGCTCCTAAAGgtacatgcct ... gtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttgataggcttactgtaagtatgcatgacctgactattttgttgtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCAAGGCTGTGAAGTCTGGGGCAGGCAAGAAGAAGACCAAGAAGATTCGCAC
                             acctgac  putative branch site (score: 3)
                                    tattttgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tgggcataaccagtaatcaccatgctaaacttcatgaactatttgatttgataggcttactgtaagtatgcatgacctgactattttgttgtttgattagCCGCTCCTGCCAAGAAGGGTGATGCCAAGGCCCAGGCCTTGAAGGTGGCCAAGGCTGTGAAGTCTGGGGCAGGCAAGAAGAAGACCAAGAAGATTCGCAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG