1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatggatcaggcggtcaggcctcgtctattcctcagcttcgttccacttgtttccattaggattcagcgccagttgcacagattgatccacacaaacaagtactggtacttgcttggagtaaataaaaataaaatacgtgaatcatgcaaaccaccgtttgttctccccacacagATGGTGCTTCAGTTTGCCAAGGACGAGGGCATTCCATTGGGAGGGGAAGACACAGCGCAAGTGCTGCTTGGCAGAGATACCAGACCTACAGGAGCTTACC
species | Zea mays |
transcript | GRMZM2G166597_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTTCGCAGACGCGCTCGCCAACGCCCCAGACCCTGACGCCCTCCTCCAG ATGGTGCTTCATTTTGCCAAGGACGAGGGCTTTCCTTTGGGAGGGGAAGACEST: gi|94473760|gb|EB702718.1|EB702718
genomic: CCTTCGCCGACGCGCTCGCCAACGCCCCCGACCCTGACGCCCTCCTCCAGgtaatggatc ... ccccacacagATGGTGCTTCAGTTTGCCAAGGACGAGGGCATTCCATTGGGAGGGGAAGAC
EST: CCTTCGCCGACGCGCTCGCCAACGCCCCCGACCCTGACGCCCTCCTCCAG ATGGTGCTTCAGTTTGCCAAGGACGAGGGCATTCCATTGGGAGGGGAAGACEST: gi|78111494|gb|DV529891.1|DV529891
genomic: CCTTCGCCGACGCGCTCGCCAACGCCCCCGACCCTGACGCCCTCCTCCAGgtaatggatc ... ccccacacagATGGTGCTTCAGTTTGCCAAGGACGAGGGCATTCCATTGGGAGGGGAAGAC
EST: CCTTCGCCGACGCGCTCGCCAACGCCCCCGACCCTGACGCCCTCCTCCAG ATGGTGCTTCAGTTTGCCAAGGACGAGGGCATTCCATTGGGAGGGGAAGACEST: gi|149005495|gb|EE040053.2|EE040053
genomic: CCTTCGCCGACGCGCTCGCCAACGCCCCCGACCCTGACGCCCTCCTCCAGgtaatggatc ... ccccacacagATGGTGCTTCAGTTTGCCAAGGACGAGGGCATTCCATTGGGAGGGGAAGAC
EST: CCTTCGCCGACGCGCTCGCCAACGCCCCCGAACCTGACGCCCTCCTCCAG ATGGTGCTTCAGTTTGCCAAGGACGAGGGCATTCCATTGGGAGGGGAAGACEST: gi|71319129|gb|DR796327.1|DR796327
genomic: CCTTCGCCGACGCGCTCGCCAACGCCCCCGACCCTGACGCCCTCCTCCAGgtaatggatc ... ccccacacagATGGTGCTTCAGTTTGCCAAGGACGAGGGCATTCCATTGGGAGGGGAAGAC
EST: CCTTCGCCGACGCGCTCGCCAACGCCCCCGACCCTGACGCCCTCCTCCAG ATGGTGCTTCAGTTTGCCAAGGACGAGGGCATTCCATTGGGAGGGGAAGACEST: gi|211452223|gb|FL399794.1|FL399794
genomic: CCTTCGCCGACGCGCTCGCCAACGCCCCCGACCCTGACGCCCTCCTCCAGgtaatggatc ... ccccacacagATGGTGCTTCAGTTTGCCAAGGACGAGGGCATTCCATTGGGAGGGGAAGAC
EST: CCTTCGCCGACGCGCTCGCCAACGCCCCCGACCCTGACGCCCTCCTCCAG ATGGTGCTTCAGTTTGCCAAGGACGAAGGGC-TTCCATTGGGAGGGGAAGAEST: gi|76917160|gb|DV166705.1|DV166705
genomic: CCTTCGCCGACGCGCTCGCCAACGCCCCCGACCCTGACGCCCTCCTCCAGgtaatggatc ... ccccacacagATGGTGCTTCAGTTTGCCAAGGACGA-GGGCATTCCATTGGGAGGGGAAGA
EST: CCTTCGCCGACGCGCTCGCCAACGCCCCCGACCCTGACGCCCTCCTCCAG ATGGTGCTTCAGTTTGCCAAGGACGAGGGCATTCCATTGGGAGGGGAAGACEST: gi|211193847|gb|FL473734.1|FL473734
genomic: CCTTCGCCGACGCGCTCGCCAACGCCCCCGACCCTGACGCCCTCCTCCAGgtaatggatc ... ccccacacagATGGTGCTTCAGTTTGCCAAGGACGAGGGCATTCCATTGGGAGGGGAAGAC
EST: CCTTCGCCGACGCGCTCGCCAACGCCCCCGACCCTGACGCCCTCCTCCAG ATGGTGCTTCAGTTTGCCAAGGACGAGGGCATTCCATTGGGAGGGGAAGAC
genomic: CCTTCGCCGACGCGCTCGCCAACGCCCCCGACCCTGACGCCCTCCTCCAGgtaatggatc ... ccccacacagATGGTGCTTCAGTTTGCCAAGGACGAGGGCATTCCATTGGGAGGGGAAGAC
aaataaaaataaaatacgtgaatcatgcaaaccaccgtttgttctccccacacagATGGTGCTTCAGTTTGCCAAGGACGAGGGCATTCCATTGGGAGGGGAAGACACAGCGCAAGTGCTGCTTGGCAGAGATACCAGACCTACAGGAGCTTACC
ccgtttgttctcccc CT-rich tract
aaaataaaatacgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatggatcaggcggtcaggcctcgtctattcctcagcttcgttccacttgtttccattaggattcagcgccagttgcacagattgatccacacaaacaagtactggtacttgcttggagtaaataaaaataaaatacgtgaatcatgcaaaccaccgtttgttctccccacacagATGGTGCTTCAGTTTGCCAAGGACGAGGGCATTCCATTGGGAGGGGAAGACACAGCGCAAGTGCTGCTTGGCAGAGATACCAGACCTACAGGAGCTTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT