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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttgaaataagggatgtgatatgggatctgctggagatagccttatgctataaacaaatgatgcaaatttgtaaacttgtagttgccttgcttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG

Basic information

species Zea mays
transcript GRMZM2G166345_T03
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G166345_T03 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g60660.1 (Oryza sativa), 3'ss of exon 3
tttgaaataagggatgtgatatgggatctgc-tggagatagccttatgctataaacaaatgatgcaaatttgtaaacttgtagttgccttgcttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG
      |     ||||||||     || ||  ||   |    |    |  ||  | ||| |  | |  | ||  |  ||    ||    |||||||||||||  | | || |||| | ||||||||||||||||||||||||| |||||||||||||||| || |||
----gtaagtatgatgtgattactcatttgtatgaccaccatcaatggtcattcataaaagcagaagttctgagattttaaccttttactgcttgtttcagAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGATGGACTATATCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22935750|gb|BU572025.1|BU572025
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211305850|gb|FL207358.1|FL207358
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211305838|gb|FL207346.1|FL207346
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211305848|gb|FL207356.1|FL207356
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|9953234|gb|BE639817.1|BE639817
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211165089|gb|FL207337.1|FL207337
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|71436812|gb|DR817862.1|DR817862
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|93012239|gb|EB637759.1|EB637759
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211165084|gb|FL207332.1|FL207332
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|91874367|gb|EB404324.1|EB404324
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|71320983|gb|DR797210.1|DR797210
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211165094|gb|FL207342.1|FL207342
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211307866|gb|FL207361.1|FL207361
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211307864|gb|FL207359.1|FL207359
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|93280899|gb|EB673163.1|EB673163
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211165091|gb|FL207339.1|FL207339
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|4753387|gb|AI657292.1|AI657292
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211305841|gb|FL207349.1|FL207349
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|88756567|gb|DY540708.1|DY540708
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|89248432|gb|DY620218.1|DY620218
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|87155285|gb|DY400074.1|DY400074
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|32913166|gb|CF017978.1|CF017978
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGCGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|91873663|gb|EB403620.1|EB403620
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|94477637|gb|EB706595.1|EB706595
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211165086|gb|FL207334.1|FL207334
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCANATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211165095|gb|FL207343.1|FL207343
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211165092|gb|FL207340.1|FL207340
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATA
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATA
EST: gi|67022300|gb|CO451049.1|CO451049
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|149110255|gb|EE190312.2|EE190312
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|86469720|gb|DY236090.1|DY236090
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAAAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|76286901|gb|DV026469.1|DV026469
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|61118563|gb|DN559524.1|DN559524
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211165090|gb|FL207338.1|FL207338
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211533214|gb|FL395813.1|FL395813
EST:     CTGTCAGCTGCTGATAATGGATGTGTTTGCAACTGTTCATCCTTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTG
genomic: CTGTCAGCTGCTGATAATG-ATGTGTTTGCAACTGTTCATCCTTTT-GTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTG
EST: gi|211305849|gb|FL207357.1|FL207357
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211305843|gb|FL207351.1|FL207351
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211305844|gb|FL207352.1|FL207352
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTTCTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211307865|gb|FL207360.1|FL207360
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211165088|gb|FL207336.1|FL207336
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACA
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACA
EST: gi|211165087|gb|FL207335.1|FL207335
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|94473723|gb|EB702681.1|EB702681
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAAAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|211098810|gb|FL225932.1|FL225932
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|78112560|gb|DV530954.1|DV530954
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|26559559|gb|CA831794.1|CA831794
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGG
EST: gi|113833471|gb|DW952148.1|DW952148
EST:     AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTG                         ATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCC
genomic: AACTGTCAGCTGCTGATAATGATGTGTTTGCAACTGTTCATCCTTTTGTGgtatgatgat ... cttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgctataaacaaatgatgcaaatttgtaaacttgtagttgccttgcttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG
                                        ccttgctt  CT-rich tract
                   aaatttgtaaactt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tttgaaataagggatgtgatatgggatctgctggagatagccttatgctataaacaaatgatgcaaatttgtaaacttgtagttgccttgcttgtttcagATCCGTGTTAGTGACAGCGAGTTGCAGAAATATCCACATGTACTGCGGTGGATGGACTACATTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA