1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtattttttgcttccatagtttttccttgattttccaaagaccagcagcgtcatttttacttactgctgatcttgtgtgttgggtccatctattgcagAAAAACGCGAAGGTTGTCACTATTGACAGCTACGAAGATGTACCAGCGAACGATGAGAAGAGTCTGCAGAAGGCAGTTGCAAACCAGCCTGTCAGTGTCG
species | Zea mays |
transcript | GRMZM2G166281_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAAGGATTACCCTTACAAGGGCACGGACGGACGGTGTGATGTCAACAGG AAAAACGCGAAGGTTGTCACTATTGACAGCTACGAAGATGTACCAGCGAACEST: gi|13515985|gb|BG518261.1|BG518261
genomic: AGAAGGATTACCCTTACAAGGGCACGGACGGACGGTGTGATGTCAACAGGgtattttttg ... tctattgcagAAAAACGCGAAGGTTGTCACTATTGACAGCTACGAAGATGTACCAGCGAAC
EST: AGAAGGATTACCCTTACAAGGGCACGGACGGACGGTGTGATGTCAACAGG AAAAACGTTTTTGTTGTCACTATTGACAGCTACGAAGATGTACCAGCGAACEST: gi|32923037|gb|CF027849.1|CF027849
genomic: AGAAGGATTACCCTTACAAGGGCACGGACGGACGGTGTGATGTCAACAGGgtattttttg ... tctattgcagAAAAACGCGAAGGTTGTCACTATTGACAGCTACGAAGATGTACCAGCGAAC
EST: AGAAGGATTACCCTTACAAGGGCACGGACGGACGGTGTGATGTCAACAGG AAAAACGCGAAGGTTGTCACTATTGACAGCTACGAAGATATACCAGCGAACEST: gi|18170436|gb|BM340276.1|BM340276
genomic: AGAAGGATTACCCTTACAAGGGCACGGACGGACGGTGTGATGTCAACAGGgtattttttg ... tctattgcagAAAAACGCGAAGGTTGTCACTATTGACAGCTACGAAGATGTACCAGCGAAC
EST: AGAAGGATTACCCTTACAAGGGCACGGACGGACGGTGTGATGTCAACAGG AAAAACGCGAAGGTTGTCACTATTGACAGCTACGAAGAAGTACCAGCGAACEST: gi|32923298|gb|CF028110.1|CF028110
genomic: AGAAGGATTACCCTTACAAGGGCACGGACGGACGGTGTGATGTCAACAGGgtattttttg ... tctattgcagAAAAACGCGAAGGTTGTCACTATTGACAGCTACGAAGATGTACCAGCGAAC
EST: AGAAGGATTACCCTTACAAGGGCACGGACGGACGGTGTGATGTCAACAGG AAAAACGCGAAGGTTGTCACTATTGACAGCTACGAAGATATACCAGCGAACEST: gi|71444254|gb|DR825304.1|DR825304
genomic: AGAAGGATTACCCTTACAAGGGCACGGACGGACGGTGTGATGTCAACAGGgtattttttg ... tctattgcagAAAAACGCGAAGGTTGTCACTATTGACAGCTACGAAGATGTACCAGCGAAC
EST: AGAAGGATTACCCTTACAAGGGCACGGACGGACGGTGTGATGTCAACAGG AAAAACGCGAAGGTTGTCACTATTGACAGCTACGAAGATGTACCAGCGAACEST: gi|18172588|gb|BM347976.1|BM347976
genomic: AGAAGGATTACCCTTACAAGGGCACGGACGGACGGTGTGATGTCAACAGGgtattttttg ... tctattgcagAAAAACGCGAAGGTTGTCACTATTGACAGCTACGAAGATGTACCAGCGAAC
EST: AGAAGGATTACCCTTACAAGGGCACGGACGGACGGTGTGATGTCAACAGG AAAAACGCGAAGGTTGTCACTATTGACAGCTACGAAGAAGTACCAGCGAACEST: gi|211384516|gb|FL378678.1|FL378678
genomic: AGAAGGATTACCCTTACAAGGGCACGGACGGACGGTGTGATGTCAACAGGgtattttttg ... tctattgcagAAAAACGCGAAGGTTGTCACTATTGACAGCTACGAAGATGTACCAGCGAAC
EST: AGAAGGATTACCCTTACAAGG-CACGGACGGACGATGTGATGTCAACAGG AAAAACGCGAAGGTTGTCACTATTGACAGCTACGAAGATGTACCAGCGAAC
genomic: AGAAGGATTACCCTTACAAGGGCACGGACGGACGGTGTGATGTCAACAGGgtattttttg ... tctattgcagAAAAACGCGAAGGTTGTCACTATTGACAGCTACGAAGATGTACCAGCGAAC
agcagcgtcatttttacttactgctgatcttgtgtgttgggtccatctattgcagAAAAACGCGAAGGTTGTCACTATTGACAGCTACGAAGATGTACCAGCGAACGATGAGAAGAGTCTGCAGAAGGCAGTTGCAAACCAGCCTGTCAGTGTCG
tccatct CT-rich tract
atttttactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattttttgcttccatagtttttccttgattttccaaagaccagcagcgtcatttttacttactgctgatcttgtgtgttgggtccatctattgcagAAAAACGCGAAGGTTGTCACTATTGACAGCTACGAAGATGTACCAGCGAACGATGAGAAGAGTCTGCAGAAGGCAGTTGCAAACCAGCCTGTCAGTGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG