1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagagccgagcatccgctttccgtccgtgtccgtccctgacgacgaaccagccagcgaatcctttattcctttgactggagttggtatatatatattatatactcagGTCGGCGACGCCGCGGGCTGGGCGAGCTCGTGGCGAGCGGCGCTCTTCCAGCTCCTCGCCGACGTCCCGCCTGCCCACCGCCCGTCCGTCTCCTCCATCT
species | Zea mays |
transcript | GRMZM2G166245_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ACGAGCACGGGGCCATCCATTCGGAAGGGAAGCGAGCTTACTGTGCGCCT GTCGGCGACGCCGCGGGCTGGGCGAGCTCGTGGCGAGCGGCGCTCTTCCAGEST: gi|211430590|gb|FL124287.1|FL124287
genomic: ACGAGCACGGGGCCATCCATTCGGAAGGGAAGCGAGCTTACTGTGCGCCTgtaagagccg ... atatactcagGTCGGCGACGCCGCGGGCTGGGCGAGCTCGTGGCGAGCGGCGCTCTTCCAG
EST: ACGAGCACGGGGCCATCCATTCGGAAGGGAAGCGAGCTTACTGTGCGCCT GTCGGCGACGCCGCGGGCTGGGCGAGCTCGTGGCGAGCGGCGCTCTTCCAGEST: gi|148942220|gb|EC887227.2|EC887227
genomic: ACGAGCACGGGGCCATCCATTCGGAAGGGAAGCGAGCTTACTGTGCGCCTgtaagagccg ... atatactcagGTCGGCGACGCCGCGGGCTGGGCGAGCTCGTGGCGAGCGGCGCTCTTCCAG
EST: ACGAGCACGGGGCCATCCATTCGGAAGGGAAGCGAGCTTACTGTGCGCCT GTCGGCGACGCCGCGGGCTGGGCGAGCTCGTGGCGAGCGGCGCTCTTCCAGEST: gi|149051609|gb|EE155712.2|EE155712
genomic: ACGAGCACGGGGCCATCCATTCGGAAGGGAAGCGAGCTTACTGTGCGCCTgtaagagccg ... atatactcagGTCGGCGACGCCGCGGGCTGGGCGAGCTCGTGGCGAGCGGCGCTCTTCCAG
EST: ACGAGCACGGGGCCATCCATTCGGAAGGGAAGCGAGCTTACTGTGCGCCT GTCGGCGACGCCGCGGGCTGGGCGAGCTCGTGGCGAGCGGCGCTCTTCCAGEST: gi|50328980|gb|CO524106.1|CO524106
genomic: ACGAGCACGGGGCCATCCATTCGGAAGGGAAGCGAGCTTACTGTGCGCCTgtaagagccg ... atatactcagGTCGGCGACGCCGCGGGCTGGGCGAGCTCGTGGCGAGCGGCGCTCTTCCAG
EST: ACGAGCACGGGGCCATCCATTCGGAAGGGAAGCGAGCTTACTGTGCGCCT GTCGGCGACGCCGCGGGCTGGGCGAGCTCGTGGCGAGCGGCGCTCTTCCAG
genomic: ACGAGCACGGGGCCATCCATTCGGAAGGGAAGCGAGCTTACTGTGCGCCTgtaagagccg ... atatactcagGTCGGCGACGCCGCGGGCTGGGCGAGCTCGTGGCGAGCGGCGCTCTTCCAG
cagcgaatcctttattcctttgactggagttggtatatatatattatatactcagGTCGGCGACGCCGCGGGCTGGGCGAGCTCGTGGCGAGCGGCGCTCTTCCAGCTCCTCGCCGACGTCCCGCCTGCCCACCGCCCGTCCGTCTCCTCCATCT
ctttgac putative branch site (score: 7)
agttggtatatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagccgagcatccgctttccgtccgtgtccgtccctgacgacgaaccagccagcgaatcctttattcctttgactggagttggtatatatatattatatactcagGTCGGCGACGCCGCGGGCTGGGCGAGCTCGTGGCGAGCGGCGCTCTTCCAGCTCCTCGCCGACGTCCCGCCTGCCCACCGCCCGTCCGTCTCCTCCATCT
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