1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtttgtacatgccctgctctagtcctgagcccatatgacatcttcatatactaactgatgctgaatgctactaccatcatggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG
species | Zea mays |
transcript | GRMZM2G165998_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|32915127|gb|CF019939.1|CF019939
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|32910309|gb|CF015121.1|CF015121
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|211136266|gb|FL235028.1|FL235028
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|42491995|gb|CK701041.1|CK701041
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|32918894|gb|CF023706.1|CF023706
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGGATGATGEST: gi|211137227|gb|FL235054.1|FL235054
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|211137217|gb|FL235044.1|FL235044
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|211136272|gb|FL235034.1|FL235034
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATCCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|32858130|gb|CD997811.1|CD997811
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|5895571|gb|AW036817.1|AW036817
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|211136265|gb|FL235027.1|FL235027
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|32851451|gb|CD991132.1|CD991132
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|211136269|gb|FL235031.1|FL235031
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|32915396|gb|CF020208.1|CF020208
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|32910482|gb|CF015294.1|CF015294
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|31611894|gb|CD568516.1|CD568516
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|211137218|gb|FL235045.1|FL235045
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|9731247|gb|BE509999.1|BE509999
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|32916506|gb|CF021318.1|CF021318
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGGGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|32864327|gb|CF004009.1|CF004009
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAEST: gi|32916207|gb|CF021019.1|CF021019
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAA
EST: TCCTCATCATCGGGAGGCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|111990462|gb|EE331881.1|EE331881
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|74034874|gb|DT535365.1|DT535365
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|211135335|gb|FL235023.1|FL235023
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|211137219|gb|FL235046.1|FL235046
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|193502968|gb|AM938541.1|AM938541
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|40287017|gb|CK327409.1|CK327409
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|211137220|gb|FL235047.1|FL235047
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|211136278|gb|FL235040.1|FL235040
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|211137222|gb|FL235049.1|FL235049
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|32868008|gb|CF007690.1|CF007690
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|71770494|gb|DR968431.1|DR968431
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|211137225|gb|FL235052.1|FL235052
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATCCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|108824274|gb|EC278282.1|EC278282
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|32933164|gb|CF037976.1|CF037976
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGEST: gi|32858765|gb|CD998446.1|CD998446
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
EST: TCCTCATCATCGCGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCG AACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
genomic: TCCTCATCATCGTGAGCCCAAAGAATTCATTCCTCTCGACAAACTTTCCGgtttgtacat ... ggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATG
tgacatcttcatatactaactgatgctgaatgctactaccatcatggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG
atatactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtacatgccctgctctagtcctgagcccatatgacatcttcatatactaactgatgctgaatgctactaccatcatggacatccagAACTAGGAATATTAAGCTGGCGCCTAAATGCTGATGATTGGGAGAATGATGAGAACCTCAAGAAAATTCGTGAAGCCAGGGGTTACTCTTACATG
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