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...aatgttcaagtaaaaaaccgcagcttcctctgacaaatagagtctcaagaagtgaattttcttgtttaattttaaccacaagggagctttccgttttcagCAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAGAGTTTGGGTCGCTGCCAGCACTTCAGGATGCCGTCACTGTTGTTGGTTA
species | Zea mays |
transcript | GRMZM2G165969_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTG CAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAGEST: gi|71318779|gb|DR796146.1|DR796146
genomic: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTGgtatgcatca ... ccgttttcagCAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAG
EST: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTG CAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAGEST: gi|149086117|gb|EE175658.2|EE175658
genomic: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTGgtatgcatca ... ccgttttcagCAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAG
EST: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTG CAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAGEST: gi|71328704|gb|DR801033.1|DR801033
genomic: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTGgtatgcatca ... ccgttttcagCAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAG
EST: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTG CAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAGEST: gi|149105907|gb|EE291527.2|EE291527
genomic: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTGgtatgcatca ... ccgttttcagCAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAG
EST: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTG CAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTEST: gi|148948629|gb|EC898541.2|EC898541
genomic: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTGgtatgcatca ... ccgttttcagCAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCT
EST: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTG CAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAGEST: gi|74232980|gb|DT640894.1|DT640894
genomic: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTGgtatgcatca ... ccgttttcagCAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAG
EST: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTG CAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAGEST: gi|149083010|gb|EE172257.2|EE172257
genomic: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTGgtatgcatca ... ccgttttcagCAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAG
EST: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTG CAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAGEST: gi|78116159|gb|DV534547.1|DV534547
genomic: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTGgtatgcatca ... ccgttttcagCAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAG
EST: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTG CAATGTTGACCGTTGAGGATGATGATTTCTGGAAAGGCGTTTCACCTGTAGEST: gi|31364573|gb|CD448928.1|CD448928
genomic: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTGgtatgcatca ... ccgttttcagCAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAG
EST: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTG CAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAGEST: gi|211026683|gb|FL134293.1|FL134293
genomic: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTGgtatgcatca ... ccgttttcagCAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAG
EST: ACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTTG CAATGT-GACCGTTGAAGATGATGAATTNCTGGAAAGGCGTTTCACCTGTEST: gi|74243585|gb|DT651499.1|DT651499
genomic: ACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATT-Ggtatgcatca ... ccgttttcagCAATGTTGACCGTTGAGGATGATGAATT-CTGGAAAGGCGTTTCACCTGT
EST: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTG CAATGTTGACCGTTGAAGATGATGAATTCTGGAAAG-CGGTTTCAC-TGTA
genomic: CACCAAGTACCTTGCGACTGTCCTTGCCATAGGCACCGAGTGTGACATTGgtatgcatca ... ccgttttcagCAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCG-TTTCACCTGTA
caagaagtgaattttcttgtttaattttaaccacaagggagctttccgttttcagCAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAGAGTTTGGGTCGCTGCCAGCACTTCAGGATGCCGTCACTGTTGTTGGTTA
ttttaac putative branch site (score: 46)
ctttccgttttc putative PPT
tgaattttcttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgttcaagtaaaaaaccgcagcttcctctgacaaatagagtctcaagaagtgaattttcttgtttaattttaaccacaagggagctttccgttttcagCAATGTTGACCGTTGAGGATGATGAATTCTGGAAAGGCGTTTCACCTGTAGAGTTTGGGTCGCTGCCAGCACTTCAGGATGCCGTCACTGTTGTTGGTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG