1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgccacgagttcccctcccctggatccgtttccctatctcaatctcatcctccggtcttgtgctcggaggagctcagtagccaataggggtagaccgcatgtagctcgaaattgtcgagcgtcgcgctgttttgttctcgtgaaatgattttgtgcttctctggggcagGGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG
species | Zea mays |
transcript | GRMZM2G165535_T05 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAG GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAGEST: gi|71771666|gb|DR969603.1|DR969603
genomic: GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAGgtgccacgag ... tctggggcagGGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG
EST: GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAG GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAGEST: gi|148950412|gb|EC895979.2|EC895979
genomic: GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAGgtgccacgag ... tctggggcagGGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG
EST: GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAG GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAGEST: gi|148943663|gb|EC888727.2|EC888727
genomic: GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAGgtgccacgag ... tctggggcagGGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG
EST: GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAG GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAGEST: gi|76280415|gb|DV019983.1|DV019983
genomic: GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAGgtgccacgag ... tctggggcagGGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG
EST: GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAG GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG
genomic: GCGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACAGCGCCGCGCAAGgtgccacgag ... tctggggcagGGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG
tcgagcgtcgcgctgttttgttctcgtgaaatgattttgtgcttctctggggcagGGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG
ttttgtgcttctct CT-rich tract
aaatgatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgccacgagttcccctcccctggatccgtttccctatctcaatctcatcctccggtcttgtgctcggaggagctcagtagccaataggggtagaccgcatgtagctcgaaattgtcgagcgtcgcgctgttttgttctcgtgaaatgattttgtgcttctctggggcagGGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC