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gtaagaattgagaccactcttcctcttggtcctggtgtattttttttttcgttctatgacgagaaattacatcttcatatttttttgggagcttcaccttttttttaataaaatttgggagcagCATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG
species | Zea mays |
transcript | GRMZM2G165535_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG CATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAGEST: gi|74245816|gb|DT653730.1|DT653730
genomic: GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAGgtaagaattg ... ttgggagcagCATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAG
EST: GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG CATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAGEST: gi|71299719|gb|DR785870.1|DR785870
genomic: GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAGgtaagaattg ... ttgggagcagCATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAG
EST: GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG CATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAGEST: gi|32919710|gb|CF024522.1|CF024522
genomic: GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAGgtaagaattg ... ttgggagcagCATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAG
EST: GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG CATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAGEST: gi|14646044|gb|BI180233.1|BI180233
genomic: GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAGgtaagaattg ... ttgggagcagCATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAG
EST: CTAGAGTTCATGAAGCAGCTGCGCCAG CATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAGEST: gi|71773498|gb|DR971398.1|DR971398
genomic: CTAGAGTTCATGAAGCAGCTGCGCCAGgtaagaattg ... ttgggagcagCATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAG
EST: GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAG CATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAG
genomic: GGGGTGACGCCAGAGATGCTAGAGTTCATGAAGCAGCTGCGCCAGgtaagaattg ... ttgggagcagCATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAG
catcttcatatttttttgggagcttcaccttttttttaataaaatttgggagcagCATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG
ttttaat putative branch site (score: 3)
ttcaccttttttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaattgagaccactcttcctcttggtcctggtgtattttttttttcgttctatgacgagaaattacatcttcatatttttttgggagcttcaccttttttttaataaaatttgggagcagCATGTGACAGTGGGCGTGGTTGGCGGATCCGATCTGGTGAAGATTACCGAGCAGCTCGGCAGTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC