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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtggggttgagcaaccattgaattctagggtctatgctatcatgctatgggtcttgtcttgcagacattttggatgttgactttgttcttttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG

Basic information

species Zea mays
transcript GRMZM2G165357_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 3
gtggggttgagcaaccattgaattctagggtctatgctatcatgctatgggtcttgtcttgcagacattttggatgttgac--tttgttcttttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG
|| |   | | |||   ||| ||| | |  | | ||  |          | | ||    ||   |  |   ||   ||||   | |||||||||  |||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||
gtagaactcaacaat-gttgcattgttgcct-tgtgtgactgcttggcagatttttagctgagaaagtgcgggcctttgatcatgtgttcttttctgttcagGTCATTGTCGCAGACAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATCGGACACCCAAGATTTGAGCTAATCCGTCATG

upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA12G06990.1 (Glycine max), 3'ss of exon 3
gtggggttgagcaacc-attgaattctagggtctatgctatcatgctatgggtcttgtcttgcagacattttggatgttgactttgt-tcttttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG
           || |  |||   || | | || | ||      |  | | | | || | ||  |    | |   ||| | ||      |   ||    |||||||||||||||||||||||  |||||||| ||||| |||||||| || || |||||||| || |||||||| ||||| || |||||||
---------gtcagctgattagtttattgtgtttttga----gtagttttgtttttcttttcaacgattctattatgcttacaaaacataacttctaatcagGTCATTGTTGCTGATAACTACTTCACTGGATCAAAGGACAACCTCAAAAAATGGATTGGTCATCCAAGATTCGAGCTTATTCGTCATG

upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA11G15020.1 (Glycine max), 3'ss of exon 3
gtggggttgagcaaccattgaattctagggtctatgctatcatgctatgggtcttgtcttgcagacattttggatgttgactttgt-tcttttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG
     |||    ||  | |  ||| | |  | |  |   |  || | |   |||| ||  |||    | ||  ||| | ||      |   ||    |||||||||||||||||| ||||  |||||||| ||||| |||||||| || || |||||||| || |||||||||||||| ||||||||||
-----gttagctaattagtttattgt-gtttttgagtagttttgtttt---tcttttca-gcaattctatt--atgcttacaaaacataacttctaatcagGTCATTGTTGCTGACAACTACTTCACTGGATCAAAGGACAACCTCAAAAAATGGATTGGTCATCCAAGATTTGAGCTTATCCGTCATG

upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA13G40960.1 (Glycine max), 3'ss of exon 4
-----------------------------------------------------------------------------------gtggggttgagcaaccattgaattctagggtctatgctatcatgctatgggtcttgtcttgcagacattttgg-atgttgactttgttcttttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG
                                                                                    ||   |    | |    |||    || | |  |   |||    ||| |    ||| ||||   |  || ||  |   |  || |||  ||      |||||| ||||||||||| ||||  |||||||| || || |||||||| || || ||||| || || |||||||||||||| ||||||||||
gtaagtgggttatctatttgctcataatgttgtacttctgatgttcactcatgattttactgattttatacagatgccataacttgctatcatcctatatgtgataaataagatacagcatatagaactaag---tttgacttgataaagttctgccacaatatctctgtgttt----aatcagGTAATTGTTGCTGACAACTACTTCACTGGATCCAAGGACAACCTCAAAAAATGGATAGGTCATCCAAGATTTGAGCTTATCCGTCATG

upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA15G04500.2 (Glycine max), 3'ss of exon 4
------------------------------------------------------------------------gtggggttgagcaaccattgaattctagg--gtctatgctatcatgc-tatgggtcttgtcttgcagacattttggatgt-tgactttgttcttttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG
                                                                        |  ||  | |    | ||     | || |   |  ||   ||   || ||| |  ||    |||     ||    | | |   ||    |  || |    |||||||||||||||||| ||||  |||||||| || || || ||||| || ||||||||||| || |||||||||||||| ||||||||||
gtaagagggttatctatttgctcataatgttatatttctgatgttcactcatgattttactgactttatacagatggcataacttgctatcatcctatatgtgataaataagatacagcatatagaactaagtttgatttgataaaagttctgccacaaaatctttgtttaatcagGTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGATAACCTCAAAAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCGTCATG

upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA11G15010.1 (Glycine max), 3'ss of exon 3
----gtggggttgagcaaccattgaattctagggtctatgctatcatgctatgggtcttgtcttgcagacattttggatgtt----gactttgttcttttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG
    |   ||||||  | |  ||   |  |||  |  |   |     | |||    |  ||     | |  ||| | |   |    ||   | | ||  |    |||||||||||||||||| ||||  |||||||| || ||||||||||| || |  ||||||||||| |||||||||||||| || |||||||
gttagcttggttga-tatctttttgttcttagttttgaaatttattagttattcaacaagtacgatataactttggaacaatatgtgatagtatgctggtctaatcagGTCATTGTTGCTGACAACTACTTCACTGGATCTAAAGACAACCTTAAAAGATGGATTGGCCATCCAAGATTTGAGCTAATTCGTCATG

upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA12G06980.3 (Glycine max), 3'ss of exon 3
----gtggggttgagcaaccattgaattctagggtctatgctatcatgctatgggtcttgtcttgcagacattttggatgtt----gactttgttcttttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG
    |   ||||||  | |  |    |  |||  | ||   | |   | |||    |  ||     | |   || | |   |    ||   |   ||| |    |||||||||||||||||| ||||| |||||||| || ||||||||||| || || ||||||||||| |||||||| ||||| || |||||||
gttggcttggttga-tatctttctgttcttagtttttaaattttttagttattcaacaagtacaataaaacattggaacaatatgtgatagtacgcttgtctaatcagGTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATG

upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA12G06980.2 (Glycine max), 3'ss of exon 2
gtggggttgagcaaccattgaattctagggtctatgctatcatgctatgggtcttgtcttgcagacattttggatgtt----gactttgttcttttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG
    ||||||  | |  |    |  |||  | ||   | |   | |||    |  ||     | |   || | |   |    ||   |   ||| |    |||||||||||||||||| ||||| |||||||| || ||||||||||| || || ||||||||||| |||||||| ||||| || |||||||
---tggttga-tatctttctgttcttagtttttaaattttttagttattcaacaagtacaataaaacattggaacaatatgtgatagtacgcttgtctaatcagGTCATTGTTGCTGACAACTTCTTCACTGGATCTAAAGACAACCTTAAAAAATGGATTGGCCATCCAAGATTCGAGCTAATTCGTCATG

upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT5G59290.2 (Arabidopsis thaliana), 3'ss of exon 2
gtggggttgagcaaccattgaattctagggtctatgctatcatgctatgggtcttgt-cttgcagacattttggatgttgactttgttcttttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG
                           |  | ||| | |   ||  |||  | |     |||   | ||||| || |     || ||| | ||   |||||||  ||||||||||||||| ||||||||| |||||||| ||||| ||||||||||| || ||||| || ||||| || || ||||| |
---------------------------gtttgtatacaaaattgacatgcttttcaagtttgatcatatttttgaag---gtttcgttttatt--cttcagGTGGTTGTTGCTGATAACTATTTCACTGGCTCAAAAGAAAACCTCAAGAAGTGGATCGGTCACCCCAGGTTTGAACTTATTCGTCACG

upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 2
lower sequence: AT3G46440.1 (Arabidopsis thaliana), 3'ss of exon 3
gtggggttgagcaaccattgaattctagggtctatgctatcatgctatgggtcttgtcttgcagacattttggatgttgactttgttcttttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG
          |    ||||||| |       | || | ||  |  | |  | |  |  |||   |  |  || ||||| |  || || ||||||   ||||| |||||||||||||||| ||||||||||||||| |||||||| |||||||||||||| || |||||||||||||| |||||||| |
----------gtttgcattgaaattcctatccgatacaatagtagtttatg-cgcgatttgattaagtactg-atgtttatatt-tttttttac---cagGTGATTGTTGCTGATAACTATTTCACTGGTTCAAAGGACAACCTTAAGAAGTGGATTGGTCATCCAAGATTTGAGCTTATCCGTCACG

upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv06s0004g04390.t01 (Vitis vinifera), 3'ss of exon 3
------------------------------------gtggggttgagcaaccattgaatt-ctagggtctatgctatcatgctatgggtc--ttgtcttgcagacattttggatgtt-----gactttgttc--------ttttacgttc--agGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG
                                       | | |||  |   | |      | |   | ||  | || ||  ||||   |   || ||| || ||||  || ||| |     ||   ||||         |||||| | |  |||| |||||||| |||||||  ||||| ||||| || ||||| || ||||| |||||||| || |||||||||||||| || |||||||
gttagcatggttttttcatcttatccagtctcactttctgtgctgattactgaataggcgacaaaaatataaaccataatcatatgcagcagctgactt-catacatactgtatgataagaagatcgtgtttgataatagttttacttccttagGTAATTGTTGCCGATAACTACTTCACCGGTTCTAAGGACAATCTCAAGAAATGGATTGGTCATCCAAGATTTGAGCTTATTCGTCATG

upper sequence: GRMZM2G165357_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv13s0019g00840.t01 (Vitis vinifera), 3'ss of exon 3
gtggggttgagcaaccattgaattctagggtctatgctatcatgctatgggtct-tgtcttgcagacattttggatgttgactttgttcttttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG
|        | |||  |   |||| |      |  |      ||  |||   |  ||| |    |     ||  || ||||| |  ||  |||  | | |||| ||||||||||||||||  |||||||| || ||||| ||||||| ||| |||||||| || |||||||||||||| || |||||||
gattataccaccaaaaagaaaattttgaccaatgcgtctgtctgtcatgttacaatgtatccttgggtgcttatat-ttgacatgctttctttttgcttagGTGATTGTTGCTGATAACTACTTCACTGGATCTAAAGATAACCTGAGGAAATGGATTGGTCATCCAAGATTTGAGCTTATTCGTCATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32829264|gb|CD968942.1|CD968942
EST:     TCATCGGCTCGTACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAATTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|149070503|gb|EE158907.2|EE158907
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211182716|gb|FL410032.1|FL410032
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|32787712|gb|CD936614.1|CD936614
EST:     TCATCGG-TCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|32829447|gb|CD969125.1|CD969125
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|149082965|gb|EE172201.2|EE172201
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|60394382|gb|DN227252.1|DN227252
EST:     CTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: CTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|32797525|gb|CD949761.1|CD949761
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|149070980|gb|EE159385.2|EE159385
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTAGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|32914071|gb|CF018883.1|CF018883
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|71444250|gb|DR825300.1|DR825300
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|32796729|gb|CD948965.1|CD948965
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|60339871|gb|DN206844.1|DN206844
EST:     GCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: GCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|32799379|gb|CD951615.1|CD951615
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|32798044|gb|CD950280.1|CD950280
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
EST: gi|211283078|gb|FL322113.1|FL322113
EST:     TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAG                         GTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG
genomic: TCATCGGCTCGCACCTCGTAGACAAGCTCATGGAGAACGAGAAGCACGAGgtacgtgcgc ... ttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgggtcttgtcttgcagacattttggatgttgactttgttcttttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG
                             tgttgac  putative branch site (score: 3)
                                   ctttgttcttttac  CT-rich tract
                                        ttctttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtggggttgagcaaccattgaattctagggtctatgctatcatgctatgggtcttgtcttgcagacattttggatgttgactttgttcttttacgttcagGTCATTGTTGCTGATAACTTTTTCACTGGTTCAAAAGACAACCTGAAGAAGTGGATTGGCCACCCAAGATTTGAGCTCATCCGTCATG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA