ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
RNA-Seq
PPT, BS, UA-tract
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

...caatttttcatcactgatcttatctgtcagaataactgaataaggctaacagtttggtgtactgttgattgttgatgttatgacatatttttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATGAGAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTG

Basic information

species	Zea mays
transcript	GRMZM2G165195_T01
intron #	2
splice site	3'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: GRMZM2G165195_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g29630.1 (Oryza sativa), 3'ss of exon 2

--------caatttttcatcactgatcttatctgtcagaataactgaataaggctaacagtttggtgtactgttgattgttgatgttatgacatatttttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATGAGAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTG
        ||    ||   || ||  |   | | |     |  | || |||||  || |  ||  |||||||||||| ||  || ||    ||| ||||  ||| |||||||||||||||||||| || || ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
gagagtttcagacattatccagtg-ccaagtttttacagttggcagagtaaggtgaagacctt--tgtactgttgat-gtgaatattt---cat-ttttatatgtcagGCTCTTGCTAAGGAACTAGTGAGGTCAAGACGTGCTGTTAATCGTCTCTATGAAAACAAGGCTCAACTAAATTCAGTATCAATGCATCTTGGAGAAATTG

upper sequence: GRMZM2G165195_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA11G19930.1 (Glycine max), 3'ss of exon 3

-----caatttttcatcactgatcttatctgtcagaataactgaataaggctaacagtttggtgtactgttgattgttgatgttatgacatatttttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATGAGAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTG
       |||| |  |  ||| |  | | |   ||  |||  | ||||||  |  | ||||    ||  ||  |  || |||| ||    |    ||  |   |||| ||| ||||||||||||| ||||| ||     | || || ||||||||||| || || || ||| | |||||| ||||||||||||||||||| | ||
ggaggtgatttgttttagctg-ttgtgtttccaaggttaaaagcataaggtcagtattttgagaaac-atttctccttaatgtgatactgtgcaatttgt---agGCACTTACTAAGGAACTTGTGAGATCTAGGAAAACGGTGAACCGTCTTTATGAAAATAAAGCACAAATGAATTCAATATCAATGCACCTTGGAGAGAGTG

upper sequence: GRMZM2G165195_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA04G21900.1 (Glycine max), 3'ss of exon 2

----caatttttcatcactgatcttatctgtcagaataactgaataaggctaacagtttggtgtactgttgattgttgatgttatgacatatttttcatg-acagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATGAGAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTG
       ||| |  |  ||| |   || |   ||  | |  | ||||||  |  | ||||    ||      || |   | || ||| || | | | ||   ||||| ||||||||||||||||| ||||| ||     |||| || ||||||||||| || || || ||| | |||||| ||||||||||||||||||| | ||
gcagtggtttgttttatctgttgagatttaa-aggttcaaaggataaggtcagtattttgagaaac----atttttccttattgtgatatttgtgtaatttgcagGCACTTGCTAAGGAACTTGTGAGATCTAGGAAAACTGTGAACCGTCTTTATGAAAATAAAGCACAAATGAATTCAATATCAATGCACCTTGGAGAGAGTG

upper sequence: GRMZM2G165195_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA12G08510.1 (Glycine max), 3'ss of exon 2

-----caatttttcatcactgatcttatctgtcagaataactgaataaggctaacagtttggtgtactgttgattgttgatgttatgacatatttttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATGAGAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTG
       |||| |  |  ||| |   || |   ||  |||  | ||||||  |  | ||||    ||  ||  || || |||| ||    |    ||  |   |||| ||||||||||||||||| ||||| ||     | || || ||||||||||| || || || ||| | |||||| ||||||||||||||||||| | ||
ggcggtgatttgttttatctgttgagattt-caaggttaaaagcataaggtcagtattttgagaaac-atttcttcttaatgtgatattgtgcaatttgt---agGCACTTGCTAAGGAACTTGTGAGATCTAGGAAAACGGTGAACCGTCTTTATGAAAATAAAGCACAAATGAATTCAATATCAATGCACCTTGGAGAGAGTG

upper sequence: GRMZM2G165195_T01 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA06G23570.2 (Glycine max), 3'ss of exon 3

---caatttttcatcactgatcttatctgtcagaataactgaataaggctaacagtttggtgtactgttgattgttgatgttatgacatatttttcatg-acagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATGAGAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTG
   |  |  ||  | |    |      |   ||  | |  | ||||||  |  | ||||    ||      || |   | || ||| || | |   ||   ||||| ||||| ||||||||||| ||||| || |   |||| || || |||||||| ||||| || ||| | |||||| ||||||||||||||||||| | ||
aggcggtgatttgttatctgttaagatttaaaggttcaaaggataaggtcagtattttgagaaac----atttctccttattgtgatatttgtgcaatttgcagGCACTTGCCAAGGAACTTGTGAGATCTAGGCAAACTGTGAACCGCCTTTATGAAAACAAAGCACAAATGAATTCAATATCAATGCACCTTGGAGAGAGTG

upper sequence: GRMZM2G165195_T01 (Zea mays), 3'ss of exon 2
lower sequence: Vv06s0061g00540.t01 (Vitis vinifera), 3'ss of exon 3

-caattt--ttcatcactgatcttatctgtcagaataactgaataaggctaacagtttggtgtactgttgattgttgatgttatgacatatttttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATGAGAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTG
 ||| |   |||     ||  |   |  || | | |       | |   || |  |||  |   || |   |  || || || |  |  ||      |  ||| | ||||||| |||| |||| ||||| ||| |  | || || |||||| |||| |||||||||||| | |||||  |||||||||||||||| |||| ||
tcaaatcaattctcttgtggaccagttagttatagttttaacttgaaattatcctttt--ttccctttccctctttaattttcttcctcataaaatttt-cagACACTTGCTATGGAAATTGTGAGATCTAGAAGAACAGTGAACCGTCTTCATGAAAACAAGGCTCAATTGAATTCTATATCAATGCACCTTGGGGAAAGTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|211495219|gb|FL000399.1|FL000399

EST:     AAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211490966|gb|FL175568.1|FL175568

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTNATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|76010550|gb|DT937720.1|DT937720

EST:     AATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|91052905|gb|EB163323.1|EB163323

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211496741|gb|FL175598.1|FL175598

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211496733|gb|FL175590.1|FL175590

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTNATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211496739|gb|FL175596.1|FL175596

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211496731|gb|FL175588.1|FL175588

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|91054729|gb|EB165147.1|EB165147

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211499618|gb|FL175604.1|FL175604

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|148991100|gb|EE032548.2|EE032548

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211496735|gb|FL175592.1|FL175592

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|71765371|gb|DR963308.1|DR963308

EST:     CAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: CAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211512472|gb|FL332432.1|FL332432

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211499621|gb|FL175607.1|FL175607

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211493851|gb|FL175583.1|FL175583

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211496742|gb|FL175599.1|FL175599

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|71765372|gb|DR963309.1|DR963309

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211490965|gb|FL175567.1|FL175567

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211496734|gb|FL175591.1|FL175591

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTWAGATCAAGACGTGCTGTTNATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|21331789|gb|BQ487170.1|BQ487170

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211496737|gb|FL175594.1|FL175594

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211493849|gb|FL175581.1|FL175581

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211493848|gb|FL175580.1|FL175580

EST:     A-AAATCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211499622|gb|FL175608.1|FL175608

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211493850|gb|FL175582.1|FL175582

EST:     AGAAAGCCATCAGGGAGGCTGCCAA-CGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211493840|gb|FL175572.1|FL175572

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTTATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211499614|gb|FL175600.1|FL175600

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACAYGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTNATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211493845|gb|FL175577.1|FL175577

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211493842|gb|FL175574.1|FL175574

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211490962|gb|FL175564.1|FL175564

EST:     AGAAAGCCATCAGGGAGGCTGCCAA-CGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211499616|gb|FL175602.1|FL175602

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211499626|gb|FL175612.1|FL175612

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|76010551|gb|DT937721.1|DT937721

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211493841|gb|FL175573.1|FL175573

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211493852|gb|FL175584.1|FL175584

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211499615|gb|FL175601.1|FL175601

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211493843|gb|FL175575.1|FL175575

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211496730|gb|FL175587.1|FL175587

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTNATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

EST: gi|211493847|gb|FL175579.1|FL175579

EST:     AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAG                         GCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT
genomic: AGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTAT

RNA-Seq data

ATGC Supported by RNA-Seq exonic block that spans over the splice site

atgs Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.

Found data for 4 RNA-Seq libraries.

Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 199

ATGTGCAGAGGGAGGAGAAGAACGTGGAGAAAGCCATCAGGGAGGCTGCCAAGCGCAATGACATGGGATCTGCAAAGgtagtttact ... ttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATGAGAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTG

Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 206

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 203

Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 243

atgc intronic sequence ATGC exonic sequence

Intronic sequence truncated to 55 bases.

ctaacagtttggtgtactgttgattgttgatgttatgacatatttttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATGAGAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTG

                                        tatttttc  CT-rich tract
                                ttatgacatattttt  TA-rich tract

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns

        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
caatttttcatcactgatcttatctgtcagaataactgaataaggctaacagtttggtgtactgttgattgttgatgttatgacatatttttcatgacagGCTCTTGCTAAGGAACTTGTAAGATCAAGACGTGCTGTTAATCGTCTTTATGAGAACAAGGCTCAACTAAATTCAGTATCAATGCACCTTGGAGAAATTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - -aactgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - tttggtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgat