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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtccctttcccgatgaatatggttctagcatattaaccttgtttgactatctcgtactaatgatatccatactccatttcagTGATTGTTGGCGAAATCGCTAACTTTGCAGCTTATGCATTTGCTCCTGCTATCTTAGTCACTCCACTTGGTGCACTTAGCATAATTATCAG

Basic information

species Zea mays
transcript GRMZM2G164797_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G164797_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os05g35060.1 (Oryza sativa), 3'ss of exon 2
----gtgtgtccctttcccgatgaatatggtt-ctagcatattaaccttgtttgactatctcgtactaat-gatat-ccatactccatttcagTGATTGTTGGCGAAATCGCTAACTTTGCAGCTTATGCATTTGCTCCTGCTATCTTAGTCACTCCACTTGGTGCACTTAGCATAATTATCAG
    ||| ||  |||     ||||||||  |   |  || | |       | ||      | || ||||| ||| | | || ||   | |||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
gtaagtg-gtttcttcatgcatgaatatactggttgacaaagttcttccatctgtggtgatagtgctaattgatgtactatgctttttgtcagTGATTGTTGGAGAAATCGCCAACTTCGCAGCTTATGCTTTTGCTCCTGCTATCTTGGTCACTCCACTTGGTGCACTTAGCATAATTATCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71301106|gb|DR786585.1|DR786585
EST:     TGGCTACTCATACTTGCTTGAGCCACTGTGGTGGGCAGGAATGGTAACAA                         TGATTGTTGGCGAAATCGCTAACTTTGCAGCTTATGCATTTGCTCCTGCTA
genomic: TGGCTACTCATACTTGCTTGAGCCACTGTGGTGGGCAGGAATGGTAACAAgtgtgtccct ... tccatttcagTGATTGTTGGCGAAATCGCTAACTTTGCAGCTTATGCATTTGCTCCTGCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatattaaccttgtttgactatctcgtactaatgatatccatactccatttcagTGATTGTTGGCGAAATCGCTAACTTTGCAGCTTATGCATTTGCTCCTGCTATCTTAGTCACTCCACTTGGTGCACTTAGCATAATTATCAG
                           tactaat  putative branch site (score: 1)
                                            ctccatttc  putative PPT
                              taatgatat  TA-rich tract