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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attattagaaatacttgtgcatgttatttcatgttatgttctactagtacttacaagtccatccatcaattttaaactatccatgttttactctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTTTTCCACATAGCCTATCCAAGTGCGTCGGACCAATTGAAAACAGAATTGA

Basic information

species Zea mays
transcript GRMZM2G164352_T04
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32831601|gb|CD971279.1|CD971279
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|21088918|gb|BQ401231.1|BQ401231
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|22473017|gb|BU037497.1|BU037497
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211520937|gb|FL382784.1|FL382784
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|32931723|gb|CF036535.1|CF036535
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCGGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211097514|gb|FL395916.1|FL395916
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTG
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTG
EST: gi|32830645|gb|CD970323.1|CD970323
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|26456172|gb|CA827755.1|CA827755
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|22935744|gb|BU572019.1|BU572019
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAG-GGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|31349427|gb|CD433784.1|CD433784
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|31356642|gb|CD440999.1|CD440999
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211194221|gb|FL384750.1|FL384750
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|19770363|gb|BQ035084.1|BQ035084
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211080315|gb|FL423992.1|FL423992
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|32831720|gb|CD971398.1|CD971398
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|213188056|gb|FM186556.1|FM186556
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|32851452|gb|CD991133.1|CD991133
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211356091|gb|FL413289.1|FL413289
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
EST: gi|211150174|gb|FL390449.1|FL390449
EST:     CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAG                         AGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT
genomic: CACAAATGAAGGAAACTGACATTGTCGACTGGTTCATTCCAGTAGTAAAGgtaagaggtt ... ctctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtacttacaagtccatccatcaattttaaactatccatgttttactctgttcagAGGCTAGCAGCTGGAGAGTGGTTTACAGCTCGCGTATCGTCCTGTGGTCTTTTCCACATAGCCTATCCAAGTGCGTCGGACCAATTGAAAACAGAATTGA
  tacttac  putative branch site (score: 1)
                                        ttttactct  putative PPT
                   atcaattttaaactat  TA-rich tract