1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...ccttttctgtaaactttagtgcatcttggcatttgatctgagtcaatccatttctccaggttaactattattcccctgacaaactctctcttatctgtagACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATACCGAGGATATAAGGCTGTTTCAGATCGAAGTGGGCGAG
species | Zea mays |
transcript | GRMZM2G163888_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGCGGGATAGGAAAAAGGAG ACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATACEST: gi|211347079|gb|FL098126.1|FL098126
genomic: AAGCGGGATAGGAAAAAGGAGgttcgtagac ... ttatctgtagACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATAC
EST: AAGCGGGATAGGAAAAAGGAG ACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATACEST: gi|211347080|gb|FL098127.1|FL098127
genomic: AAGCGGGATAGGAAAAAGGAGgttcgtagac ... ttatctgtagACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATAC
EST: AAGCGGGATAGGAAAAAGGAG ACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATACEST: gi|211347077|gb|FL098124.1|FL098124
genomic: AAGCGGGATAGGAAAAAGGAGgttcgtagac ... ttatctgtagACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATAC
EST: AAGCGGGATAGGAAAAAGGAG ACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATACEST: gi|211347070|gb|FL098117.1|FL098117
genomic: AAGCGGGATAGGAAAAAGGAGgttcgtagac ... ttatctgtagACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATAC
EST: AAGCGGGATAGGAAAAAGGAG ACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATACEST: gi|211344681|gb|FL098115.1|FL098115
genomic: AAGCGGGATAGGAAAAAGGAGgttcgtagac ... ttatctgtagACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATAC
EST: AAGCGGGATAGGAAAAAGGAG ACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATACEST: gi|211347072|gb|FL098119.1|FL098119
genomic: AAGCGGGATAGGAAAAAGGAGgttcgtagac ... ttatctgtagACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATAC
EST: AAGCGGGATAGGAAAAAGGAG ACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATACEST: gi|211347078|gb|FL098125.1|FL098125
genomic: AAGCGGGATAGGAAAAAGGAGgttcgtagac ... ttatctgtagACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATAC
EST: AAGCGGGATAGGAAAAAGGAG ACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATACEST: gi|211347069|gb|FL098116.1|FL098116
genomic: AAGCGGGATAGGAAAAAGGAGgttcgtagac ... ttatctgtagACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATAC
EST: AAGCGGGATAGGAAAAAGGAG ACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATAC
genomic: AAGCGGGATAGGAAAAAGGAGgttcgtagac ... ttatctgtagACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATAC
atccatttctccaggttaactattattcccctgacaaactctctcttatctgtagACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATACCGAGGATATAAGGCTGTTTCAGATCGAAGTGGGCGAG
ccctgac putative branch site (score: 419)
ctctctcttatctgt putative PPT
ttaactattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttttctgtaaactttagtgcatcttggcatttgatctgagtcaatccatttctccaggttaactattattcccctgacaaactctctcttatctgtagACTAAAGTTAATCACGAAACAAGGCCTCGACCTTTCCAGAAATATACATACCGAGGATATAAGGCTGTTTCAGATCGAAGTGGGCGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- ttttctg
- - - - - - - - - gtgcatc
- - - - - - - - - - - - - - - - -tgatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcccctg