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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gctcagctctatctccaactttttttcctttcctgacgcgaaactgggctgacttccctgggcgcgtccgtgcagGTCGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTATGGCACGCCTCCCTGTGGCACATGCACGAGTCGCACCACCGGTCGTGCGAGGGCCCAT

Basic information

species Zea mays
transcript GRMZM2G163683_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G163683_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os04g48880.1 (Oryza sativa), 3'ss of exon 2
------------------gctcag-ctctatct-ccaactttttttcctttcctgacg-cgaaactgggctgactt----ccctgggcgcgtccgtgcagGTCGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTATGGCACGCCTCCCTGTGGCACATGCACGAGTCGCACCACCGGTCGTGCGAGGGCCCAT
                  ||  |  | || | | |   ||  |       |   || | | ||| |  ||| | ||    | || |  | |    ||||||| ||||||||||||||||||| ||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||  || |||||||||| |
gtaagcggccgtgacaccgcaaaatccctgtttgctcgctgataacgtccttgggatgtcaaaattttgcttaattttgacgctcgctggggggttgcagGTTGGGATGGAGTTCTGGGCGCAGTGGGCGCACCGCTCGCTGTGGCACGCCTCCCTGTGGCACATGCACGAGTCGCACCACCGTGCGCGCGAGGGCCCGT

upper sequence: GRMZM2G163683_T02 (Zea mays), 3'ss of exon 2
lower sequence: GLYMA09G24530.1 (Glycine max), 3'ss of exon 2
------------------------------gctcagctctatctccaactttttttcctttcctgac--------------gcgaaactgggctg----acttccctgggcgcgtccg---tgcagGTCGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTATGGCACGCCTCCCTGTGGCACATGCACGAGTCGCACCACCGGTCGTGCGAGGGCCCAT
                                 ||  ||  | |  || |  ||||   |||   |               | |||  | || ||    | |    ||||   ||| |   | ||||| || |||||||| |||||  | ||||| ||| |||| |||||||| || ||||||||||||||||| |||                            
gtgagtaatcatccttttaattgattatgattccaattcagttttgaattgctttttaattcagaattgggtgagttctttgtgaattttgggtggtagattcaattgggtatgtctgattttcagGTGGGTATGGAGTTTTGGGCTAGATGGGCTCACAGGGCTCTATGGCATGCTTCCCTGTGGCACATGCATGAG----------------------------

upper sequence: GRMZM2G163683_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv02s0025g00240.t01 (Vitis vinifera), 3'ss of exon 2
----------------gctcagctct-atct-ccaactttttttcctttcctgacgcgaaactgggctgacttccctgggcgc-gtccgtg--cagGTCGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTATGGCACGCCTCCCTGTGGCACATGCACGAGTCGCACCACCGGTCGTGCGAGGGCCCAT
                  | |||| | || |   ||||  |      | | ||| |  | | ||      ||    |||| || ||   |   ||||| ||||||||||| |||||||||||||| |||   ||||| ||||| || || |||||||| |||||||||                            
gtaagttagctaacgctataagctttcatgtattaactgctgaaaaatccttgaagaaaga-tgatgaatctcaagtgggtgctgttgattatcagGTGGGGATGGAGTTTTGGGCGCGGTGGGCTCACAAAGCGCTCTGGCATGCTTCACTGTGGCATATGCACGAG----------------------------

upper sequence: GRMZM2G163683_T02 (Zea mays), 3'ss of exon 2
lower sequence: Vv16s0050g01090.t01 (Vitis vinifera), 3'ss of exon 2
--------------------------gctcagct-ctatctccaact--ttttttcctttcctgacgcgaaac---tgggctgacttccc-tgggcgcgtccg---tgcagGTCGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTATGGCACGCCTCCCTGTGGCACATGCACGAGTCGCACCACCGGTCGTGCGAGGGCCCAT
                            || | | |||  ||||| |  | ||| |    |  |    ||  |   || | ||| |     | ||    |        ||||| || ||||||||||||||| | ||||| |||   || || |||||||||||| | |||||||||||||||                            
gtaagtgcctttttcccttcattttccttcggtttctagttccaaatcatgtttgcgaagctgggtttgaggcgattgcgttgaatcgaaataggtattttttattctcagGTAGGCATGGAGTTCTGGGCGAGATGGGCTCACAAAGCTCTCTGGCACGCCTCCTTATGGCACATGCACGAG----------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71447017|gb|DR828067.1|DR828067
EST:     GGCACGTTTGCGCTCTCCGTCGGCGCGGCGGTACGCGGCGGTCCTTGGCA                         GTCGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTATGGCACGCC
genomic: GGCACGTTTGCGCTCTCCGTCGGCGCGGCGGTACGCGGCGGTCCTTGGCAgctcagctct ... gtccgtgcagGTCGGGATGGAGTTCTGGGCGCGGTGGGCGCACCGGGCGCTATGGCACGCC