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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgattaaactgcagtatatataatgattttagtttatttcttggattgttatgtgcccttataatccgtaaaagtacagATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGCAAATATGATCCTGCTTATCATGTTGTTTCCCGTTTGATCACAGAGTACA

Basic information

species Zea mays
transcript GRMZM2G163464_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G163464_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os01g67870.1 (Oryza sativa), 3'ss of exon 3
gtatgattaaactgcagtatatataatgattttag---tttatttcttggattgttatgtgccc---------ttataatccgtaaaagta---cagATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGCAAATATGATCCTGCTTATCATGTTGTTTCCCGTTTGATCACAGAGTACA
|||||   | |||||| |     | |||| ||  |   ||| ||  |     |||||  | |           |||| | |   |||| ||   ||||| ||||| |||||||| ||||||||||||||| ||||| | || || |||||| ||||||| |||||||||| |||||| ||||||||  |||| ||||
gtatggacagactgcaatggtagttatgacttatgacctttgttgttcatgatgttaaatactggagtatatgttattaacaaaaaaaataatacagATCACATCTCTTTATGGGGGGCCACTGGAATTCCTGTTTGTAGTAGAAAGCAAAGATGATCCAGCTTATCATGCTGTTTCACGTTTGATAGCAGAATACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattttagtttatttcttggattgttatgtgcccttataatccgtaaaagtacagATTACATCACTTTATGGTGGGCCACTGGAATTCTTGTTTATCGTCGAGAGCAAATATGATCCTGCTTATCATGTTGTTTCCCGTTTGATCACAGAGTACA
     tagtttattt  TA-rich tract