1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...atcatgccttaagcaaatgcatgctaatctacaggaaattttgttagcgcacttcactagcttactccaagtactgattttcttttatattttttctcagGGTACTGCAGATGCTGTAAGGCAATACTTGTGGTTATTTGAGGAACATAATGTGATGGAGTTTCTAATTCTTGCTGGCGATCACCTGTACCGGATGGATT
species | Zea mays |
transcript | GRMZM2G163437_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTGAAGTCTTAGCTGCACAGCAGAGCCCAGATAATCCAAACTGGTTTCAG GGTACTGCAGATGCTGTAAGGCAATACTTGTGGTTATTTGAGGAACAEST: gi|71429623|gb|DR810673.1|DR810673
genomic: TTGAAGTCTTAGCTGCACAGCAGAGCCCAGATAATCCAAACTGGTTTCAGgtatccctac ... tttttctcagGGTACTGCAGATGCTGTAAGGCAATACTTGTGGTTATTTGAGGAACA
EST: TTGAAGTCTTAGCTGCACAGCAGAGCCCAGATAATCCAAACTGGTTTCAG GGTACTGCAGATGCTGTAAGGCAATACTTGTGGTTATTTGAGGAACATAATEST: gi|148963182|gb|EE014154.2|EE014154
genomic: TTGAAGTCTTAGCTGCACAGCAGAGCCCAGATAATCCAAACTGGTTTCAGgtatccctac ... tttttctcagGGTACTGCAGATGCTGTAAGGCAATACTTGTGGTTATTTGAGGAACATAAT
EST: TTGAAGTCTTAGCTGCACAGCAGAGCCCAGATAATCCAAACTGGTTTCAG GGTACTGCAGATGCTGTAAGGCAATACTTGTGGTTATTTGAGGAACATAAT
genomic: TTGAAGTCTTAGCTGCACAGCAGAGCCCAGATAATCCAAACTGGTTTCAGgtatccctac ... tttttctcagGGTACTGCAGATGCTGTAAGGCAATACTTGTGGTTATTTGAGGAACATAAT
agcgcacttcactagcttactccaagtactgattttcttttatattttttctcagGGTACTGCAGATGCTGTAAGGCAATACTTGTGGTTATTTGAGGAACATAATGTGATGGAGTTTCTAATTCTTGCTGGCGATCACCTGTACCGGATGGATT
tactgat putative branch site (score: 246)
ttttcttttatatttt CT-rich tract
aagtactgattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atcatgccttaagcaaatgcatgctaatctacaggaaattttgttagcgcacttcactagcttactccaagtactgattttcttttatattttttctcagGGTACTGCAGATGCTGTAAGGCAATACTTGTGGTTATTTGAGGAACATAATGTGATGGAGTTTCTAATTCTTGCTGGCGATCACCTGTACCGGATGGATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
-tcatgcc
- - - - - aagcaaa
- - - - - - - - -tgcatgc
- - - - - - - - - - - - - - - - - - - ttttgtt
- - - - - - - - - - - - - - - - - - - - - - - - gcacttc