1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cagattttacaatcaatacaccttgtcattcaaattagggattgcagttttgagttcatattgactgctcatgagtcctaaccaatttctctttgtgaagGTTTATAGCCCACTTGGCAATGGCGTATGTTTTCACATTTTGGACCTGCTATGTACTATTACGTGAGTATGAAGTAGTTGCAAAGATGAGACTGCGATTT
species | Zea mays |
transcript | GRMZM2G163334_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGCAATGTTGATAAGCTTTCAATATCAAACATACCAGTTGGATCAAAAAG GTTTATAGCCCACTTGGCAATGGCGTATGTTTTCACATTTTGGACCTGCTAEST: gi|211158734|gb|FL327704.1|FL327704
genomic: AGCAATGTTGATAAGCTTTCAATATCAAACATACCAGTTGGATCAAAAAGgttagcactt ... ctttgtgaagGTTTATAGCCCACTTGGCAATGGCGTATGTTTTCACATTTTGGACCTGCTA
EST: AGCAATGTTGATAAGCTTTCAATATCAAACATACCAGTTGGATCAAAAAG GTTTATAGCCCACTTGGCAATGGCGTATGTTTTCACATTTTGGACCTGCTA
genomic: AGCAATGTTGATAAGCTTTCAATATCAAACATACCAGTTGGATCAAAAAGgttagcactt ... ctttgtgaagGTTTATAGCCCACTTGGCAATGGCGTATGTTTTCACATTTTGGACCTGCTA
agttttgagttcatattgactgctcatgagtcctaaccaatttctctttgtgaagGTTTATAGCCCACTTGGCAATGGCGTATGTTTTCACATTTTGGACCTGCTATGTACTATTACGTGAGTATGAAGTAGTTGCAAAGATGAGACTGCGATTT
tcctaac putative branch site (score: 216)
tttctctttgt putative PPT
ttcatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagattttacaatcaatacaccttgtcattcaaattagggattgcagttttgagttcatattgactgctcatgagtcctaaccaatttctctttgtgaagGTTTATAGCCCACTTGGCAATGGCGTATGTTTTCACATTTTGGACCTGCTATGTACTATTACGTGAGTATGAAGTAGTTGCAAAGATGAGACTGCGATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - cattcaa
- - - - - - - - - - - - - - - - - - - - - tgcagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgactgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctaacca