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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtcactctaattcactcatgtccttcacaacagcatagccactctctcaataccaattgatatttcctcttgtttaactgttgtagGAACTAGAACAATAGGTGTCTTAAGCAAAATCGATCAGGCAGCTGCAGATGCAAAAACCGTTTCTTGTGTTCAGTCCATTTTGTCCAATAAGGGTGCCCC

Basic information

species Zea mays
transcript GRMZM2G163325_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G163325_T01 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os02g50550.1 (Oryza sativa), 3'ss of exon 6
gtctgtcactctaattcactcatgtccttcacaacag------catagccactctctcaataccaa-------ttgatatttcctcttgtttaact-gttgtagGAACTAGAACAATAGGTGTCTTAAGCAAAATCGATCAGGCAGCTGCAGATGCAAAAACCGTTTCTTGTGTTCAGTCCATTTTGTCCAATAAGGGTGCCCC
|||||| | |  |||||    |  |||| | ||| ||      |||| ||| ||||||  || |||        |||| |||   |||||| | || ||||||||||| |||||||||||||| ||||| ||||| ||||| ||| |||||||||||||||| || |||||||||||| | || ||||| || |||||||| ||
gtctgtta-taaaattcttata-atcctgcccaataggcaattcata-ccattctctccgtagcaagtagaaactgatgtttatccttgttcatcttgttgtagGAACCAGAACAATAGGTGTTTTAAGTAAAATTGATCAAGCATCTGCAGATGCAAAAACTGTATCTTGTGTTCAGGCTATCTTGTCTAACAAGGGTGCACC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcatagccactctctcaataccaattgatatttcctcttgtttaactgttgtagGAACTAGAACAATAGGTGTCTTAAGCAAAATCGATCAGGCAGCTGCAGATGCAAAAACCGTTTCTTGTGTTCAGTCCATTTTGTCCAATAAGGGTGCCCC
                                        gtttaac  putative branch site (score: 3)
                       aattgatattt  TA-rich tract