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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcaatcttgtattggctaggtcacttttctttgttataacctttactgcactatactctttgtttatagtctttatgcattaatttgtgtttcacatagGTTGGGCAACCTGTGCAATCATCCAACTCAGTTCACCAATCAGCTACCCAACAAACAGTTTCATCTCAATCTGTTGAACCGTTGGCAGTTGTGGCACCCT

Basic information

species Zea mays
transcript GRMZM2G162409_T01
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G162409_T01 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os07g25710.4 (Oryza sativa), 3'ss of exon 2
----atcaatcttgtattggctaggtcacttttctttgttataacctttactgcactatactctttgtttatagtctttatgcattaatttgtgtttcacatagGTTGGGCAACCTGTGCAATCATCCAACTCAGTTCACCAATCAGCTACCCAACAAACAGTTTCATCTCAATCTGTTGAACCGTTGGCAGTTGTGGCACCCT
    ||  ||  | |  || |||   ||  ||  || |||   |   || ||  ||   |  |    | ||      |  |||  || ||| | ||  | ||||||||| | | ||| |||||||||   | ||||||||||||||||| |||||||| |||||||||||||||| |  ||||| |  |||||||    |||||
tgctattcattgt-tgatgactactgcaaattctttagttcctagtctt-ctagac-gcatccaacatgtaattgagtggtgctcta-tttatcttcaatatagGTTGGACCAGCTGCGCAATCATCTGTCGCAGTTCACCAATCAGCTGCCCAACAATCAGTTTCATCTCAATCAGGAGAACCTTCTGCAGTTGCTATACCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32943364|gb|CF048183.1|CF048183
EST:     AGGATTGGAAGGACATGGTTGATAACCCGACTTCCACAGAAACTCAACCG                         GTTGGGCAACCTGTGCAATCATCCAACTCAGTTCACCAATCAGCTACCCAA
genomic: AGGATTGGAAGGACATGGTTGATAACCCGACTTCCACAGAAACTCAACCGgtacgctagt ... tttcacatagGTTGGGCAACCTGTGCAATCATCCAACTCAGTTCACCAATCAGCTACCCAA
EST: gi|211106908|gb|FK992455.1|FK992455
EST:     AAGGACATGGTTGATAACCCGACTTCCACAGAAACTCAACCG                         GTTGGGCAACCTGTGCAATCATCCAACTCAGTTCACCAATCAGCTACCCAA
genomic: AAGGACATGGTTGATAACCCGACTTCCACAGAAACTCAACCGgtacgctagt ... tttcacatagGTTGGGCAACCTGTGCAATCATCCAACTCAGTTCACCAATCAGCTACCCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actgcactatactctttgtttatagtctttatgcattaatttgtgtttcacatagGTTGGGCAACCTGTGCAATCATCCAACTCAGTTCACCAATCAGCTACCCAACAAACAGTTTCATCTCAATCTGTTGAACCGTTGGCAGTTGTGGCACCCT
                                 cattaat  putative branch site (score: 3)
                           tttatgcattaattt  TA-rich tract