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gtaagtgatgtcatactctctagatggctagtaatgtaagtttcattgttatcatgcacaaaaccaagtgaatgattcttgttctaaatgatgtagTTTGTCCACTGGAGTTTGATGAACCTTCTTCAGTCGTTAAGGCGTGTGGCAAGGCATCATCTTCAACGTTATCATGCTGCGCAGCATTGCACTCTTACAT
species | Zea mays |
transcript | GRMZM2G162251_T02 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTGGTTGCAAGGTGAACAAAG TTTGTCCACTGGAGTTTGATGAACCTTCTTCAGTCGTTAAGGCGTGTGGCAEST: gi|67034972|gb|CO463505.1|CO463505
genomic: TCTGGTTGCAAGGTGAACAAAGgtaagtgatg ... aatgatgtagTTTGTCCACTGGAGTTTGATGAACCTTCTTCAGTCGTTAAGGCGTGTGGCA
EST: GGAAGCTAATAGTGCTTTCAGAGTATTATCTGGTTGCAAGGTGAACAAAG TTTGTCCACTGGAGTTTGATGAACCTTCTTCAGTCGTTAAGGCGTGTGGCAEST: gi|211018595|gb|FL002896.1|FL002896
genomic: GGAAGCTAATAGTGCTTTCAGAGTATTATCTGGTTGCAAGGTGAACAAAGgtaagtgatg ... aatgatgtagTTTGTCCACTGGAGTTTGATGAACCTTCTTCAGTCGTTAAGGCGTGTGGCA
EST: GGAAGCTAATAGTGCTTTCAGAGTATTATCTGGTTGCAAGGTGAACAAAG TTTGTCCACTGGAGTTTGATGAACCTTCTTCAGTCGTTAAGGCGTGTGGCAEST: gi|211018594|gb|FL002895.1|FL002895
genomic: GGAAGCTAATAGTGCTTTCAGAGTATTATCTGGTTGCAAGGTGAACAAAGgtaagtgatg ... aatgatgtagTTTGTCCACTGGAGTTTGATGAACCTTCTTCAGTCGTTAAGGCGTGTGGCA
EST: GGAAGCTAATAGTGCTTTCAGAGTATTATCTGGTTGCAAGGTGAACAAAG TTTGTCCACTGGAGTTTGATGAACCTTCTTCAGTCGTTAAGGCGTGTGGCA
genomic: GGAAGCTAATAGTGCTTTCAGAGTATTATCTGGTTGCAAGGTGAACAAAGgtaagtgatg ... aatgatgtagTTTGTCCACTGGAGTTTGATGAACCTTCTTCAGTCGTTAAGGCGTGTGGCA
ttcattgttatcatgcacaaaaccaagtgaatgattcttgttctaaatgatgtagTTTGTCCACTGGAGTTTGATGAACCTTCTTCAGTCGTTAAGGCGTGTGGCAAGGCATCATCTTCAACGTTATCATGCTGCGCAGCATTGCACTCTTACAT
ttctaaa putative branch site (score: 72)
ttctaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgatgtcatactctctagatggctagtaatgtaagtttcattgttatcatgcacaaaaccaagtgaatgattcttgttctaaatgatgtagTTTGTCCACTGGAGTTTGATGAACCTTCTTCAGTCGTTAAGGCGTGTGGCAAGGCATCATCTTCAACGTTATCATGCTGCGCAGCATTGCACTCTTACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC