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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

atgtgccctttataaaaataaatgaaattccatttttaatattgaggatttcttttcctgtgcaatttatatattttgtcccttttcttacAGATGTCAGTACTTCCAAGTGTTCAACCTTTCCATGCCATTGCTTATCCTATTGATCCATTGCTTGCTTTGGAAATAAG

Basic information

species Zea mays
transcript GRMZM2G162151_T01
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22819494|gb|BU499584.1|BU499584
EST:     ATGTTGAAGAAATTATTAGAAGGCAAATAA                         AGATGTCAGTACTTCCAAG-GTTCAACCTTTCCATGCCATTGCTTATCCTA
genomic: ATGTTGAAGAAATTATTAGAAGGCAAATAAatgtgccctt ... cttttcttacAGATGTCAGTACTTCCAAGTGTTCAACCTTTCCATGCCATTGCTTATCCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatattgaggatttcttttcctgtgcaatttatatattttgtcccttttcttacAGATGTCAGTACTTCCAAGTGTTCAACCTTTCCATGCCATTGCTTATCCTATTGATCCATTGCTTGCTTTGGAAATAAG
 ttttaat  putative branch site (score: 3)
 tattttgtcccttttc  putative PPT
 aatttatatattttgt  TA-rich tract